SIMILAR PATTERNS OF AMINO ACIDS FOR 5B2O_A_ACTA1728

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1tkl COPROPORPHYRINOGEN
III OXIDASE

(Saccharomyces
cerevisiae) 		PF01218
(Coprogen_oxidas) 		4 THR A 148
TRP A 149
ASP A 217
ASN A  92
 None
 1.05A 5b2oA-1tklA:
0.0		 5b2oA-1tklA:
10.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2e27 ANTI-CIGUATOXIN
ANTIBODY, LIGHT
CHAIN

(Mus musculus) 		PF07686
(V-set) 		4 GLN L  27
THR L  95
ASP L  92
ASN L  93
 None
 1.26A 5b2oA-2e27L:
0.0		 5b2oA-2e27L:
5.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3va6 TWO-COMPONENT SYSTEM
SENSOR HISTIDINE
KINASE

(Bacteroides
thetaiotaomicron) 		PF07494
(Reg_prop)
PF07495
(Y_Y_Y) 		4 THR A 323
TRP A 309
ASP A 324
ASN A 305
 None
 1.10A 5b2oA-3va6A:
0.0		 5b2oA-3va6A:
18.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4e9l ATTACHING AND
EFFACING PROTEIN,
PATHOGENESIS FACTOR

(Escherichia
coli) 		PF09134
(Invasin_D3) 		4 THR A 747
TRP A 748
ASP A 742
ASN A 743
 None
 1.48A 5b2oA-4e9lA:
0.0		 5b2oA-4e9lA:
13.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oxi ENTEROBACTIN
SYNTHETASE COMPONENT
F-RELATED PROTEIN

(Vibrio cholerae) 		PF00501
(AMP-binding) 		4 GLN A 456
THR A 245
ASP A 243
ASN A 108
 None
 1.30A 5b2oA-4oxiA:
0.0		 5b2oA-4oxiA:
15.93
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5b2o CRISPR-ASSOCIATED
ENDONUCLEASE CAS9

(Francisella
tularensis) 		no annotation 5 GLN A  92
THR A1458
TRP A1459
ASP A1460
ASN A1462
 U  B  49 (-3.1A)
ACT  A1728 (-3.3A)
ACT  A1728 (-4.0A)
ACT  A1728 (-4.9A)
ACT  A1728 (-4.0A)
 0.00A 5b2oA-5b2oA:
52.9		 5b2oA-5b2oA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5g5z ABC TRANSPORTER,
SUBSTRATE-BINDING
PROTEIN

(Streptococcus
pneumoniae) 		PF01547
(SBP_bac_1) 		4 GLN A 392
THR A 386
ASP A 389
ASN A 394
 None
 1.47A 5b2oA-5g5zA:
0.0		 5b2oA-5g5zA:
14.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xfm ALPHA-GLUCOSIDASE

(Bacteroides
thetaiotaomicron) 		no annotation 4 GLN A 378
THR A 174
TRP A 171
ASN A 374
 None
 1.37A 5b2oA-5xfmA:
0.1		 5b2oA-5xfmA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cl6 TAIL FIBER PROTEIN

(Pseudomonas
aeruginosa) 		no annotation 4 THR A 600
TRP A 609
ASP A 611
ASN A 612
 None
 1.46A 5b2oA-6cl6A:
0.0		 5b2oA-6cl6A:
undetectable