SIMILAR PATTERNS OF AMINO ACIDS FOR 4Z4H_A_IPHA905

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lml LEISHMANOLYSIN

(Leishmania
major) 		PF01457
(Peptidase_M8) 		4 ASP A 342
ALA A 340
THR A 355
TYR A 353
 None
 1.44A 4z4hA-1lmlA:
0.0		 4z4hA-1lmlA:
18.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2oux MAGNESIUM
TRANSPORTER

(Enterococcus
faecalis) 		PF00571
(CBS)
PF03448
(MgtE_N) 		4 ASP A  67
ALA A 100
THR A 143
TYR A  96
 None
None
MG  A 406 ( 4.9A)
None
 1.10A 4z4hA-2ouxA:
undetectable		 4z4hA-2ouxA:
15.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vpw THIOSULFATE
REDUCTASE

(Thermus
thermophilus) 		PF00384
(Molybdopterin)
PF01568
(Molydop_binding)
PF04879
(Molybdop_Fe4S4) 		4 ASP A 275
LYS A 281
THR A 283
TYR A 278
 None
 1.10A 4z4hA-2vpwA:
1.0		 4z4hA-2vpwA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kb6 D-LACTATE
DEHYDROGENASE

(Aquifex
aeolicus) 		PF00389
(2-Hacid_dh)
PF02826
(2-Hacid_dh_C) 		4 ASP A  76
ALA A 230
THR A 208
TYR A 204
 PPI  A 453 (-3.9A)
NAD  A 400 (-4.6A)
NAD  A 400 (-4.7A)
None
 1.07A 4z4hA-3kb6A:
3.1		 4z4hA-3kb6A:
16.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kjr DIHYDROFOLATE
REDUCTASE/THYMIDYLAT
E SYNTHASE

(Babesia bovis) 		PF00186
(DHFR_1)
PF00303
(Thymidylat_synt) 		4 ASP A 416
ALA A 508
THR A 251
TYR A 456
 None
 1.44A 4z4hA-3kjrA:
0.0		 4z4hA-3kjrA:
21.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pg5 UNCHARACTERIZED
PROTEIN

(Corynebacterium
diphtheriae) 		PF13614
(AAA_31) 		4 ASP A 186
ALA A 192
LYS A  10
THR A 183
 None
 1.16A 4z4hA-3pg5A:
2.6		 4z4hA-3pg5A:
16.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qlb ENANTIO-PYOCHELIN
RECEPTOR

(Pseudomonas
fluorescens) 		PF00593
(TonB_dep_Rec)
PF07715
(Plug) 		4 ASP A 564
ALA A  31
THR A  59
TYR A  33
 None
 1.44A 4z4hA-3qlbA:
0.0		 4z4hA-3qlbA:
23.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3voh CELLOBIOHYDROLASE

(Coprinopsis
cinerea) 		PF01341
(Glyco_hydro_6) 		4 ASP A 314
ALA A 256
THR A 307
TYR A 313
 None
 1.25A 4z4hA-3vohA:
0.9		 4z4hA-3vohA:
18.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4h0f LAMININ-BINDING
SURFACE PROTEIN

(Streptococcus
agalactiae) 		PF01297
(ZnuA) 		4 ASP A 140
ALA A 208
THR A 145
TYR A 211
 None
ZN  A 401 ( 4.0A)
None
None
 1.50A 4z4hA-4h0fA:
2.0		 4z4hA-4h0fA:
15.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4huc PROBABLE CONSERVED
LIPOPROTEIN LPPS

(Mycobacterium
tuberculosis) 		PF03734
(YkuD) 		4 ASP A 367
ALA A 362
THR A 326
TYR A 366
 None
 1.25A 4z4hA-4hucA:
undetectable		 4z4hA-4hucA:
15.40
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4krf PROTEIN ARGONAUTE-1

(Homo sapiens) 		PF02170
(PAZ)
PF02171
(Piwi)
PF08699
(ArgoL1)
PF16486
(ArgoN)
PF16487
(ArgoMid)
PF16488
(ArgoL2) 		5 ASP A 535
ALA A 541
LYS A 568
THR A 853
TYR A 855
 None
None
U  R   1 ( 3.2A)
None
None
 0.14A 4z4hA-4krfA:
60.0		 4z4hA-4krfA:
82.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4mq0 PARKIA BIGLOBOSA
LECTIN (PBL)

(Parkia
biglobosa) 		PF01419
(Jacalin) 		4 ASP A 431
ALA A 429
THR A 389
TYR A 432
 MMA  A 502 (-3.1A)
None
None
MMA  A 502 (-3.8A)
 1.46A 4z4hA-4mq0A:
undetectable		 4z4hA-4mq0A:
20.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4np4 TOXIN B

(Clostridioides
difficile) 		PF01473
(CW_binding_1) 		4 ASP A1924
ALA A1922
LYS A1906
TYR A1942
 None
 1.42A 4z4hA-4np4A:
undetectable		 4z4hA-4np4A:
15.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qtf L,D-TRANSPEPTIDASE
LDTB

(Mycobacterium
tuberculosis) 		PF03734
(YkuD) 		4 ASP A 367
ALA A 362
THR A 326
TYR A 366
 None
 1.24A 4z4hA-4qtfA:
undetectable		 4z4hA-4qtfA:
18.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rhb LPS-ASSEMBLY PROTEIN
LPTD

(Escherichia
coli) 		PF04453
(OstA_C) 		4 ASP A 569
ALA A 571
THR A 505
TYR A 504
 None
 1.47A 4z4hA-4rhbA:
undetectable		 4z4hA-4rhbA:
21.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xxt FUSION OF PREDICTED
ZN-DEPENDENT
AMIDASE/PEPTIDASE
(CELL WALL
HYDROLASE/DD-CARBOXY
PEPTIDASE FAMILY)
AND UNCHARACTERIZED
DOMAIN OF ERFK
FAMILY
PEPTODOGLYCAN-BINDIN
G DOMAIN

(Clostridium
acetobutylicum) 		PF01471
(PG_binding_1)
PF03734
(YkuD) 		4 ASP A 270
ALA A 265
THR A 225
TYR A 269
 None
 1.29A 4z4hA-4xxtA:
undetectable		 4z4hA-4xxtA:
14.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5czr CADHERIN-RELATED
FAMILY MEMBER 2

(Homo sapiens) 		PF00028
(Cadherin) 		4 ASP A  99
ALA A 136
THR A 198
TYR A 193
 CA  A1002 ( 2.7A)
CA  A1004 (-4.4A)
None
None
 1.35A 4z4hA-5czrA:
undetectable		 4z4hA-5czrA:
14.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5im2 TWIN-ARGININE
TRANSLOCATION
PATHWAY SIGNAL

(Rhodoferax
ferrireducens) 		PF03480
(DctP) 		4 ASP A  80
ALA A  76
THR A  92
TYR A  79
 None
 1.15A 4z4hA-5im2A:
undetectable		 4z4hA-5im2A:
18.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vm9 PROTEIN ARGONAUTE-3

(Homo sapiens) 		no annotation 5 ASP A 538
ALA A 544
LYS A 571
THR A 856
TYR A 858
 None
None
A  B   1 ( 2.9A)
None
None
 0.63A 4z4hA-5vm9A:
55.9		 4z4hA-5vm9A:
79.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wea PROTEIN ARGONAUTE-2

(Homo sapiens) 		no annotation 4 ASP A 537
ALA A 543
LYS A 570
THR A 855
 None
None
A  B   1 ( 4.0A)
None
 1.20A 4z4hA-5weaA:
59.1		 4z4hA-5weaA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wea PROTEIN ARGONAUTE-2

(Homo sapiens) 		no annotation 4 ASP A 537
ALA A 543
LYS A 570
TYR A 857
 None
None
A  B   1 ( 4.0A)
None
 0.68A 4z4hA-5weaA:
59.1		 4z4hA-5weaA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xmd EPOXIDE HYDROLASE A

(Vigna radiata) 		no annotation 4 ASP A 261
ALA A 297
THR A 267
TYR A 266
 None
 1.47A 4z4hA-5xmdA:
2.8		 4z4hA-5xmdA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xyi GUANINE
NUCLEOTIDE-BINDING
PROTEIN BETA
SUBUNIT, PUTATIVE

(Trichomonas
vaginalis) 		no annotation 4 ASP g 324
ALA g  35
THR g 307
TYR g 322
 None
 1.36A 4z4hA-5xyig:
undetectable		 4z4hA-5xyig:
17.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6aso U4/U6
SNRNA-ASSOCIATED-SPL
ICING FACTOR PRP24

(Saccharomyces
cerevisiae) 		no annotation 4 ASP A  91
ALA A  88
THR A  41
TYR A  90
 None
 1.48A 4z4hA-6asoA:
3.0		 4z4hA-6asoA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6f91 PUTATIVE
ALPHA-1,2-MANNOSIDAS
E

(Bacteroides
thetaiotaomicron) 		no annotation 4 ASP A 461
ALA A 398
THR A 425
TYR A 396
 None
 0.93A 4z4hA-6f91A:
undetectable		 4z4hA-6f91A:
undetectable