SIMILAR PATTERNS OF AMINO ACIDS FOR 4YVP_A_GBMA402_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1akc ASPARTATE
AMINOTRANSFERASE

(Gallus gallus) 		PF00155
(Aminotran_1_2) 		5 LEU A 341
TRP A 350
ILE A 353
LEU A 373
LEU A 365
 None
 1.35A 4yvpA-1akcA:
undetectable		 4yvpA-1akcA:
21.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fob BETA-1,4-GALACTANASE

(Aspergillus
aculeatus) 		PF07745
(Glyco_hydro_53) 		5 TYR A  57
LEU A  65
TYR A  61
ILE A  44
LEU A  15
 None
 1.45A 4yvpA-1fobA:
12.0		 4yvpA-1fobA:
21.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1hn0 CHONDROITIN ABC
LYASE I

(Proteus
vulgaris) 		PF02278
(Lyase_8)
PF02884
(Lyase_8_C)
PF09092
(Lyase_N)
PF09093
(Lyase_catalyt) 		5 TYR A 741
HIS A 667
ILE A 654
LEU A 701
LEU A 706
 None
 1.10A 4yvpA-1hn0A:
undetectable		 4yvpA-1hn0A:
15.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jr2 UROPORPHYRINOGEN-III
SYNTHASE

(Homo sapiens) 		PF02602
(HEM4) 		5 LEU A  74
TRP A  83
ILE A 110
LEU A 140
LEU A  59
 None
 1.17A 4yvpA-1jr2A:
undetectable		 4yvpA-1jr2A:
22.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1muu GDP-MANNOSE
6-DEHYDROGENASE

(Pseudomonas
aeruginosa) 		PF00984
(UDPG_MGDP_dh)
PF03720
(UDPG_MGDP_dh_C)
PF03721
(UDPG_MGDP_dh_N) 		5 TYR A 191
LEU A  19
HIS A  24
ILE A   5
LEU A 186
 None
 1.33A 4yvpA-1muuA:
undetectable		 4yvpA-1muuA:
22.64
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1q5m PROSTAGLANDIN-E2
9-REDUCTASE

(Oryctolagus
cuniculus) 		PF00248
(Aldo_ket_red) 		6 TYR A  24
TYR A  55
TRP A  86
HIS A 117
ILE A 129
GLU A 224
 None
NDP  A1003 (-4.9A)
None
NDP  A1003 (-4.3A)
None
None
 0.62A 4yvpA-1q5mA:
53.1		 4yvpA-1q5mA:
80.12
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1q5m PROSTAGLANDIN-E2
9-REDUCTASE

(Oryctolagus
cuniculus) 		PF00248
(Aldo_ket_red) 		6 TYR A  55
TRP A  86
HIS A 117
ILE A 129
GLU A 224
TRP A 227
 NDP  A1003 (-4.9A)
None
NDP  A1003 (-4.3A)
None
None
None
 0.82A 4yvpA-1q5mA:
53.1		 4yvpA-1q5mA:
80.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1s5j DNA POLYMERASE I

(Sulfolobus
solfataricus) 		PF00136
(DNA_pol_B)
PF03104
(DNA_pol_B_exo1) 		5 TYR A 578
LEU A 594
TYR A 595
LEU A 188
LEU A 186
 None
 1.26A 4yvpA-1s5jA:
undetectable		 4yvpA-1s5jA:
18.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ser PROTEIN (SERYL-TRNA
SYNTHETASE
(E.C.6.1.1.11))

(Thermus
thermophilus) 		PF00587
(tRNA-synt_2b)
PF02403
(Seryl_tRNA_N) 		5 TYR A 248
TYR A 281
HIS A 234
LEU A 239
LEU A 244
 None
 1.49A 4yvpA-1serA:
undetectable		 4yvpA-1serA:
24.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1stz HEAT-INDUCIBLE
TRANSCRIPTION
REPRESSOR HRCA
HOMOLOG

(Thermotoga
maritima) 		PF01628
(HrcA) 		5 LEU A 160
TRP A 184
ILE A 187
LEU A 223
LEU A 219
 None
 1.41A 4yvpA-1stzA:
undetectable		 4yvpA-1stzA:
24.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bxy MALTOOLIGOSYLTREHALO
SE TREHALOHYDROLASE

(Deinococcus
radiodurans) 		PF00128
(Alpha-amylase)
PF02922
(CBM_48)
PF11941
(DUF3459) 		5 TYR A 130
ILE A 396
GLU A 443
LEU A 518
LEU A 430
 None
 0.91A 4yvpA-2bxyA:
9.2		 4yvpA-2bxyA:
17.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2eh3 TRANSCRIPTIONAL
REGULATOR

(Aquifex
aeolicus) 		PF00440
(TetR_N) 		5 LEU A  76
ILE A  61
GLU A  82
LEU A 164
LEU A 142
 None
None
MG  A1002 ( 2.9A)
None
None
 1.31A 4yvpA-2eh3A:
undetectable		 4yvpA-2eh3A:
21.30
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2fvl ALDO-KETO REDUCTASE
FAMILY 1, MEMBER C4

(Homo sapiens) 		PF00248
(Aldo_ket_red) 		5 TYR A  24
LEU A  54
TYR A  55
TRP A  86
HIS A 117
 None
None
NAP  A1001 (-4.7A)
None
NAP  A1001 (-4.4A)
 0.24A 4yvpA-2fvlA:
52.5		 4yvpA-2fvlA:
82.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hpi DNA POLYMERASE III
ALPHA SUBUNIT

(Thermus
aquaticus) 		PF02811
(PHP)
PF07733
(DNA_pol3_alpha)
PF14579
(HHH_6) 		5 LEU A1021
TYR A1018
HIS A1013
GLU A1073
LEU A1070
 None
 1.19A 4yvpA-2hpiA:
4.0		 4yvpA-2hpiA:
14.11
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2ipj ALDO-KETO REDUCTASE
FAMILY 1 MEMBER C2

(Homo sapiens) 		PF00248
(Aldo_ket_red) 		6 TYR A  55
HIS A 222
GLU A 224
TRP A 227
LEU A 306
LEU A 308
 FFA  A 325 ( 4.3A)
NAP  A   1 ( 4.8A)
None
FFA  A 325 (-3.8A)
FFA  A 325 (-4.8A)
FFA  A 325 (-4.5A)
 0.81A 4yvpA-2ipjA:
54.4		 4yvpA-2ipjA:
97.51
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2ipj ALDO-KETO REDUCTASE
FAMILY 1 MEMBER C2

(Homo sapiens) 		PF00248
(Aldo_ket_red) 		8 TYR A  55
TRP A  86
HIS A 117
ILE A 129
HIS A 222
TRP A 227
LEU A 306
LEU A 308
 FFA  A 325 ( 4.3A)
None
FFA  A 325 ( 3.8A)
None
NAP  A   1 ( 4.8A)
FFA  A 325 (-3.8A)
FFA  A 325 (-4.8A)
FFA  A 325 (-4.5A)
 0.59A 4yvpA-2ipjA:
54.4		 4yvpA-2ipjA:
97.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2own PUTATIVE
OLEOYL-[ACYL-CARRIER
PROTEIN]
THIOESTERASE

(Lactobacillus
plantarum) 		PF01643
(Acyl-ACP_TE) 		5 LEU A  30
HIS A 237
TRP A 253
LEU A 191
LEU A 196
 None
 1.17A 4yvpA-2ownA:
undetectable		 4yvpA-2ownA:
21.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2raa PYRUVATE SYNTHASE
SUBUNIT PORC

(Thermotoga
maritima) 		PF01558
(POR) 		5 LEU A  99
ILE A  79
TRP A  12
LEU A  27
LEU A 142
 None
 1.42A 4yvpA-2raaA:
undetectable		 4yvpA-2raaA:
23.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2y35 LD22664P

(Drosophila
melanogaster) 		PF03159
(XRN_N) 		5 LEU A 443
TYR A 439
ILE A 321
LEU A 296
LEU A 306
 None
 1.44A 4yvpA-2y35A:
undetectable		 4yvpA-2y35A:
14.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2z66 VARIABLE LYMPHOCYTE
RECEPTOR B,
TOLL-LIKE RECEPTOR 4

(Eptatretus
burgeri;
Homo sapiens) 		PF01462
(LRRNT)
PF13855
(LRR_8) 		5 LEU A 564
TRP A 593
ILE A 594
LEU A 549
LEU A 574
 None
 1.28A 4yvpA-2z66A:
undetectable		 4yvpA-2z66A:
21.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hxt 5-FORMYLTETRAHYDROFO
LATE CYCLO-LIGASE

(Homo sapiens) 		PF01812
(5-FTHF_cyc-lig) 		5 LEU A 131
TYR A 169
ILE A  54
LEU A 196
LEU A 173
 None
 1.44A 4yvpA-3hxtA:
undetectable		 4yvpA-3hxtA:
20.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kq0 ALPHA-1-ACID
GLYCOPROTEIN 1

(Homo sapiens) 		PF00061
(Lipocalin) 		5 TYR A 127
LEU A 101
TYR A 110
LEU A  62
LEU A  79
 None
 1.43A 4yvpA-3kq0A:
undetectable		 4yvpA-3kq0A:
20.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lhx KETODEOXYGLUCONOKINA
SE

(Shigella
flexneri) 		PF00294
(PfkB) 		5 LEU A 186
TRP A 185
ILE A 194
GLU A 228
LEU A 204
 None
 1.50A 4yvpA-3lhxA:
undetectable		 4yvpA-3lhxA:
23.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lmm UNCHARACTERIZED
PROTEIN

(Corynebacterium
diphtheriae) 		PF04326
(AlbA_2)
PF13749
(HATPase_c_4) 		5 ILE A 296
GLU A 326
TRP A 324
LEU A 242
LEU A 275
 None
 1.48A 4yvpA-3lmmA:
undetectable		 4yvpA-3lmmA:
20.56
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ln3 DIHYDRODIOL
DEHYDROGENASE

(Mus musculus) 		PF00248
(Aldo_ket_red) 		5 TYR A  24
TYR A  55
HIS A 117
GLU A 226
LEU A 306
 MLY  A  25 (-3.6A)
NAD  A 327 ( 4.7A)
MRD  A 328 ( 3.9A)
MLY  A  27 ( 3.3A)
MRD  A 328 ( 4.3A)
 0.93A 4yvpA-3ln3A:
51.0		 4yvpA-3ln3A:
66.87
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ln3 DIHYDRODIOL
DEHYDROGENASE

(Mus musculus) 		PF00248
(Aldo_ket_red) 		5 TYR A  24
TYR A  55
TRP A  86
HIS A 117
LEU A 306
 MLY  A  25 (-3.6A)
NAD  A 327 ( 4.7A)
None
MRD  A 328 ( 3.9A)
MRD  A 328 ( 4.3A)
 0.55A 4yvpA-3ln3A:
51.0		 4yvpA-3ln3A:
66.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fhn NUCLEOPORIN NUP120

(Schizosaccharomyces
pombe) 		PF11715
(Nup160) 		5 LEU B 440
ILE B 426
GLU B 501
TRP B 502
LEU B 471
 None
 1.49A 4yvpA-4fhnB:
undetectable		 4yvpA-4fhnB:
14.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ggj MITOCHONDRIAL
CARDIOLIPIN
HYDROLASE

(Mus musculus) 		PF13091
(PLDc_2) 		5 LEU A 103
TRP A 171
ILE A 165
LEU A 110
LEU A  91
 None
 1.22A 4yvpA-4ggjA:
undetectable		 4yvpA-4ggjA:
19.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4j9v POTASSIUM UPTAKE
PROTEIN TRKA

(Vibrio
parahaemolyticus) 		PF02080
(TrkA_C)
PF02254
(TrkA_N) 		5 TYR A 232
LEU A 136
ILE A 348
LEU A 251
LEU A 247
 None
 1.49A 4yvpA-4j9vA:
2.8		 4yvpA-4j9vA:
21.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4l7v PROTEIN-L-ISOASPARTA
TE
O-METHYLTRANSFERASE

(Vibrio cholerae) 		PF01135
(PCMT) 		5 LEU A  30
TYR A  88
ILE A 122
GLU A  81
LEU A  96
 None
None
None
SAH  A 301 ( 4.6A)
None
 1.40A 4yvpA-4l7vA:
undetectable		 4yvpA-4l7vA:
23.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4p72 PHENYLALANINE--TRNA
LIGASE BETA SUBUNIT

(Pseudomonas
aeruginosa) 		PF01588
(tRNA_bind)
PF03147
(FDX-ACB)
PF03483
(B3_4)
PF03484
(B5) 		5 TYR A 471
LEU A 416
GLU A 463
LEU A 468
LEU A 428
 None
 1.42A 4yvpA-4p72A:
undetectable		 4yvpA-4p72A:
19.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4p72 PHENYLALANINE--TRNA
LIGASE BETA SUBUNIT

(Pseudomonas
aeruginosa) 		PF01588
(tRNA_bind)
PF03147
(FDX-ACB)
PF03483
(B3_4)
PF03484
(B5) 		5 TYR A 471
LEU A 474
GLU A 463
LEU A 468
LEU A 428
 None
 1.33A 4yvpA-4p72A:
undetectable		 4yvpA-4p72A:
19.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4p8s RETICULON-4
RECEPTOR-LIKE 2

(Rattus
norvegicus) 		PF13855
(LRR_8) 		5 TYR A 161
LEU A 209
ILE A 231
LEU A 181
LEU A 205
 None
 1.09A 4yvpA-4p8sA:
undetectable		 4yvpA-4p8sA:
21.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xrt STFQ
AROMATASE/CYCLASE

(Streptomyces
steffisburgensis) 		PF03364
(Polyketide_cyc) 		5 LEU A  29
TRP A  72
HIS A  56
ILE A  81
LEU A 134
 None
 1.25A 4yvpA-4xrtA:
undetectable		 4yvpA-4xrtA:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lad PUTATIVE GTP-BINDING
PROTEIN

(Thermotoga
maritima) 		PF01926
(MMR_HSR1) 		5 LEU A 387
TYR A 386
HIS A 323
ILE A 316
LEU A 290
 None
 1.48A 4yvpA-5ladA:
undetectable		 4yvpA-5ladA:
21.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5t9g GLYCOSIDE HYDROLASE

(Bacteroides
uniformis) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF16355
(DUF4982) 		5 TYR A 131
TYR A 403
ILE A 437
LEU A 415
LEU A 492
 None
 1.22A 4yvpA-5t9gA:
9.1		 4yvpA-5t9gA:
17.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5t9t PROTOCADHERIN GAMMA
B2-ALPHA C

(Mus musculus) 		PF00028
(Cadherin)
PF08266
(Cadherin_2) 		5 LEU A 374
ILE A 408
GLU A 360
LEU A 380
LEU A 326
 None
 1.49A 4yvpA-5t9tA:
undetectable		 4yvpA-5t9tA:
22.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vha DEAH
(ASP-GLU-ALA-HIS)
BOX POLYPEPTIDE 36

(Bos taurus) 		no annotation 5 LEU A 476
TYR A 409
ILE A 569
LEU A 509
LEU A 506
 None
 1.46A 4yvpA-5vhaA:
undetectable		 4yvpA-5vhaA:
15.21
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
6f2u ALDO-KETO REDUCTASE
FAMILY 1 MEMBER C3

(Homo sapiens) 		no annotation 5 TYR A  24
LEU A  54
TYR A  55
TRP A  86
HIS A 117
 CJ2  A 402 (-4.2A)
None
CJ2  A 402 ( 4.1A)
None
CJ2  A 402 ( 3.8A)
 0.29A 4yvpA-6f2uA:
51.2		 4yvpA-6f2uA:
96.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6ghc -

(-) 		no annotation 5 LEU A 275
TYR A 269
ILE A 199
LEU A 255
LEU A 247
 None
 1.43A 4yvpA-6ghcA:
undetectable		 4yvpA-6ghcA:
undetectable