SIMILAR PATTERNS OF AMINO ACIDS FOR 4YSH_B_GLYB402

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cb8 PROTEIN
(CHONDROITINASE AC)

(Pedobacter
heparinus) 		PF02278
(Lyase_8)
PF02884
(Lyase_8_C)
PF08124
(Lyase_8_N) 		4 GLU A 371
TYR A 234
ARG A 292
ARG A 288
 None
GOL  A2010 (-3.9A)
GOL  A2010 ( 2.6A)
GOL  A2010 ( 3.7A)
 1.27A 4yshB-1cb8A:
0.0		 4yshB-1cb8A:
21.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1i8q HYALURONATE LYASE

(Streptococcus
agalactiae) 		PF02278
(Lyase_8)
PF02884
(Lyase_8_C)
PF08124
(Lyase_8_N) 		4 GLU A 657
TYR A 488
ARG A 546
ARG A 542
 None
None
NAG  A1002 (-3.3A)
NAG  A1002 (-4.6A)
 1.21A 4yshB-1i8qA:
undetectable		 4yshB-1i8qA:
18.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1iv8 MALTOOLIGOSYL
TREHALOSE SYNTHASE

(Sulfolobus
acidocaldarius) 		PF00128
(Alpha-amylase)
PF09196
(DUF1953) 		4 GLU A 255
TYR A  50
ARG A   7
ARG A 226
 None
 1.49A 4yshB-1iv8A:
0.8		 4yshB-1iv8A:
19.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1j0n XANTHAN LYASE

(Bacillus sp.
GL1) 		PF02278
(Lyase_8)
PF02884
(Lyase_8_C)
PF08124
(Lyase_8_N) 		4 GLU A 421
TYR A 255
ARG A 313
ARG A 309
 None
CEG  A 780 (-4.4A)
CEG  A 780 (-2.9A)
CEG  A 780 (-3.6A)
 1.30A 4yshB-1j0nA:
0.0		 4yshB-1j0nA:
20.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1k2p TYROSINE-PROTEIN
KINASE BTK

(Homo sapiens) 		PF07714
(Pkinase_Tyr) 		4 MET A 449
GLU A 445
ARG A 520
ARG A 544
 None
 1.31A 4yshB-1k2pA:
undetectable		 4yshB-1k2pA:
21.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kp0 CREATINE
AMIDINOHYDROLASE

(Actinobacillus) 		PF00557
(Peptidase_M24)
PF01321
(Creatinase_N) 		4 GLU A  23
TYR A  53
ARG A  30
ARG A  26
 None
 1.43A 4yshB-1kp0A:
0.0		 4yshB-1kp0A:
22.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1n7r HYALURONIDASE

(Streptococcus
pneumoniae) 		PF02278
(Lyase_8)
PF02884
(Lyase_8_C)
PF08124
(Lyase_8_N) 		4 GLU A 577
TYR A 408
ARG A 466
ARG A 462
 None
NAG  A1002 ( 2.6A)
NAG  A1002 (-3.4A)
BDP  A1001 ( 3.1A)
 1.21A 4yshB-1n7rA:
0.0		 4yshB-1n7rA:
19.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wda PUTATIVE SECRETED
LYASE

(Streptomyces
violaceoruber) 		PF02278
(Lyase_8)
PF02884
(Lyase_8_C)
PF08124
(Lyase_8_N) 		4 GLU A 429
TYR A 253
ARG A 311
ARG A 307
 None
L42  A1784 ( 3.4A)
L42  A1784 (-2.8A)
L42  A1784 (-3.4A)
 1.29A 4yshB-2wdaA:
0.0		 4yshB-2wdaA:
21.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hje 704AA LONG
HYPOTHETICAL
GLYCOSYLTRANSFERASE

(Sulfurisphaera
tokodaii) 		PF00128
(Alpha-amylase)
PF09196
(DUF1953) 		4 GLU A 249
TYR A  48
ARG A   8
ARG A 220
 GOL  A 804 (-3.8A)
GOL  A 802 ( 4.3A)
None
None
 1.46A 4yshB-3hjeA:
0.8		 4yshB-3hjeA:
18.65
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3if9 GLYCINE OXIDASE

(Bacillus
subtilis) 		PF01266
(DAO) 		4 MET A  49
TYR A 246
ARG A 302
ARG A 329
 FAD  A 371 (-4.4A)
GOA  A 370 ( 4.5A)
GOA  A 370 ( 4.0A)
GOA  A 370 ( 3.1A)
 0.51A 4yshB-3if9A:
52.7		 4yshB-3if9A:
38.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nzg PUTATIVE RACEMASE

(Pseudovibrio
sp. JE062) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		4 MET A 104
GLU A 296
TYR A  91
ARG A 269
 None
 1.09A 4yshB-3nzgA:
undetectable		 4yshB-3nzgA:
23.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3v3t CELL DIVISION GTPASE
FTSZ, DIVERGED

(Clostridium
botulinum) 		PF00091
(Tubulin) 		4 MET A 207
GLU A 244
ARG A 268
ARG A 267
 None
 1.47A 4yshB-3v3tA:
undetectable		 4yshB-3v3tA:
21.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4b56 ECTONUCLEOTIDE
PYROPHOSPHATASE/PHOS
PHODIESTERASE FAMILY
MEMBER 1

(Mus musculus) 		PF01033
(Somatomedin_B)
PF01223
(Endonuclease_NS)
PF01663
(Phosphodiest) 		4 MET A 233
GLU A 547
TYR A 250
ARG A 869
 None
 1.21A 4yshB-4b56A:
undetectable		 4yshB-4b56A:
17.65
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4ysh GLYCINE OXIDASE

(Geobacillus
kaustophilus) 		PF01266
(DAO) 		4 MET A  49
GLU A  55
TYR A 253
ARG A 309
 FAD  A 401 (-4.3A)
None
None
FAD  A 401 (-3.4A)
 0.98A 4yshB-4yshA:
62.9		 4yshB-4yshA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6c01 ECTONUCLEOTIDE
PYROPHOSPHATASE/PHOS
PHODIESTERASE FAMILY
MEMBER 3

(Homo sapiens) 		no annotation 4 MET A 200
GLU A 513
TYR A 217
ARG A 838
 None
None
NAG  A 912 ( 3.9A)
None
 1.19A 4yshB-6c01A:
undetectable		 4yshB-6c01A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6db5 HUMAN MONOCLONAL
ANTI-HIV-1 GP120 V3
ANTIBODY TA6 FAB
HEAVY CHAIN

(Homo sapiens) 		no annotation 4 MET H  48
GLU H  46
TYR H  90
ARG H  66
 None
 1.49A 4yshB-6db5H:
undetectable		 4yshB-6db5H:
undetectable