SIMILAR PATTERNS OF AMINO ACIDS FOR 4XIA_A_SORA400

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0c XYLOSE ISOMERASE

(Thermoanaerobacterium
thermosulfurigenes) 		PF01261
(AP_endonuc_2) 		5 HIS A 100
THR A 140
GLU A 267
HIS A 270
ASP A 295
 None
None
CO  A 492 ( 2.5A)
CO  A 492 ( 3.5A)
CO  A 491 ( 3.1A)
 1.27A 4xiaA-1a0cA:
38.6		 4xiaA-1a0cA:
27.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0c XYLOSE ISOMERASE

(Thermoanaerobacterium
thermosulfurigenes) 		PF01261
(AP_endonuc_2) 		6 HIS A 100
THR A 140
VAL A 185
TRP A 187
LYS A 233
ASP A 306
 None
None
None
None
None
CO  A 492 ( 1.9A)
 0.87A 4xiaA-1a0cA:
38.6		 4xiaA-1a0cA:
27.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0c XYLOSE ISOMERASE

(Thermoanaerobacterium
thermosulfurigenes) 		PF01261
(AP_endonuc_2) 		6 THR A 140
TRP A 187
LYS A 233
GLU A 267
HIS A 270
ASP A 338
 None
None
None
CO  A 492 ( 2.5A)
CO  A 492 ( 3.5A)
CO  A 491 ( 3.1A)
 1.36A 4xiaA-1a0cA:
38.6		 4xiaA-1a0cA:
27.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0c XYLOSE ISOMERASE

(Thermoanaerobacterium
thermosulfurigenes) 		PF01261
(AP_endonuc_2) 		10 TRP A  48
HIS A 100
THR A 140
VAL A 185
TRP A 187
LYS A 233
GLU A 267
HIS A 270
ASP A 295
ASP A 338
 None
None
None
None
None
None
CO  A 492 ( 2.5A)
CO  A 492 ( 3.5A)
CO  A 491 ( 3.1A)
CO  A 491 ( 3.1A)
 0.42A 4xiaA-1a0cA:
38.6		 4xiaA-1a0cA:
27.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0d XYLOSE ISOMERASE

(Geobacillus
stearothermophilus) 		PF01261
(AP_endonuc_2) 		6 HIS A  98
THR A 138
TRP A 185
GLU A 265
HIS A 268
ASP A 293
 None
None
None
MN  A 492 ( 2.3A)
MN  A 492 (-4.2A)
MN  A 491 ( 3.4A)
 1.29A 4xiaA-1a0dA:
38.7		 4xiaA-1a0dA:
28.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0d XYLOSE ISOMERASE

(Geobacillus
stearothermophilus) 		PF01261
(AP_endonuc_2) 		6 HIS A  98
THR A 138
TRP A 185
HIS A 268
ASP A 304
ASP A 293
 None
None
None
MN  A 492 (-4.2A)
MN  A 492 ( 3.2A)
MN  A 491 ( 3.4A)
 1.30A 4xiaA-1a0dA:
38.7		 4xiaA-1a0dA:
28.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0d XYLOSE ISOMERASE

(Geobacillus
stearothermophilus) 		PF01261
(AP_endonuc_2) 		10 TRP A  47
HIS A  98
THR A 138
VAL A 183
TRP A 185
LYS A 231
GLU A 265
HIS A 268
ASP A 293
ASP A 336
 None
None
None
None
None
MN  A 492 ( 4.8A)
MN  A 492 ( 2.3A)
MN  A 492 (-4.2A)
MN  A 491 ( 3.4A)
MN  A 491 ( 3.1A)
 0.43A 4xiaA-1a0dA:
38.7		 4xiaA-1a0dA:
28.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0d XYLOSE ISOMERASE

(Geobacillus
stearothermophilus) 		PF01261
(AP_endonuc_2) 		9 TRP A  47
HIS A  98
THR A 138
VAL A 183
TRP A 185
LYS A 231
HIS A 268
ASP A 304
ASP A 336
 None
None
None
None
None
MN  A 492 ( 4.8A)
MN  A 492 (-4.2A)
MN  A 492 ( 3.2A)
MN  A 491 ( 3.1A)
 0.78A 4xiaA-1a0dA:
38.7		 4xiaA-1a0dA:
28.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0e XYLOSE ISOMERASE

(Thermotoga
neapolitana) 		PF01261
(AP_endonuc_2) 		5 HIS A 100
THR A 140
GLU A 267
HIS A 270
ASP A 295
 None
None
CO  A 492 ( 2.5A)
CO  A 492 ( 3.5A)
CO  A 491 ( 3.2A)
 1.26A 4xiaA-1a0eA:
40.2		 4xiaA-1a0eA:
27.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0e XYLOSE ISOMERASE

(Thermotoga
neapolitana) 		PF01261
(AP_endonuc_2) 		11 TRP A  48
HIS A 100
THR A 140
VAL A 185
TRP A 187
LYS A 233
GLU A 267
HIS A 270
ASP A 295
ASP A 306
ASP A 338
 None
None
None
None
None
CO  A 492 ( 4.4A)
CO  A 492 ( 2.5A)
CO  A 492 ( 3.5A)
CO  A 491 ( 3.2A)
CO  A 492 (-4.3A)
CO  A 491 ( 3.0A)
 0.43A 4xiaA-1a0eA:
40.2		 4xiaA-1a0eA:
27.91
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1bhw XYLOSE ISOMERASE

(Actinoplanes
missouriensis) 		PF01261
(AP_endonuc_2) 		5 HIS A  54
THR A  90
TRP A 137
ASP A 255
ASP A 245
 None
 1.42A 4xiaA-1bhwA:
57.6		 4xiaA-1bhwA:
67.43
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1bhw XYLOSE ISOMERASE

(Actinoplanes
missouriensis) 		PF01261
(AP_endonuc_2) 		5 HIS A  54
THR A  90
TRP A 137
GLU A 217
ASP A 245
 None
 1.44A 4xiaA-1bhwA:
57.6		 4xiaA-1bhwA:
67.43
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1bhw XYLOSE ISOMERASE

(Actinoplanes
missouriensis) 		PF01261
(AP_endonuc_2) 		5 MET A  88
THR A  90
TRP A 137
GLU A 217
ASP A 292
 None
 1.48A 4xiaA-1bhwA:
57.6		 4xiaA-1bhwA:
67.43
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1bhw XYLOSE ISOMERASE

(Actinoplanes
missouriensis) 		PF01261
(AP_endonuc_2) 		10 TRP A  16
HIS A  54
MET A  88
THR A  90
VAL A 135
TRP A 137
LYS A 183
ASP A 245
ASP A 255
ASP A 292
 None
 0.57A 4xiaA-1bhwA:
57.6		 4xiaA-1bhwA:
67.43
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1bhw XYLOSE ISOMERASE

(Actinoplanes
missouriensis) 		PF01261
(AP_endonuc_2) 		10 TRP A  16
HIS A  54
MET A  88
THR A  90
VAL A 135
TRP A 137
LYS A 183
GLU A 217
ASP A 245
ASP A 292
 None
 0.19A 4xiaA-1bhwA:
57.6		 4xiaA-1bhwA:
67.43
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1bxc XYLOSE ISOMERASE

(Thermus
caldophilus) 		PF01261
(AP_endonuc_2) 		7 HIS A  53
MET A  87
THR A  89
TRP A 136
GLU A 216
HIS A 219
ASP A 286
 None
 1.42A 4xiaA-1bxcA:
52.3		 4xiaA-1bxcA:
51.89
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1bxc XYLOSE ISOMERASE

(Thermus
caldophilus) 		PF01261
(AP_endonuc_2) 		11 TRP A  15
HIS A  53
MET A  87
THR A  89
VAL A 134
TRP A 136
LYS A 182
GLU A 216
HIS A 219
ASP A 244
ASP A 286
 None
 0.31A 4xiaA-1bxcA:
52.3		 4xiaA-1bxcA:
51.89
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1bxc XYLOSE ISOMERASE

(Thermus
caldophilus) 		PF01261
(AP_endonuc_2) 		10 TRP A  15
HIS A  53
MET A  87
THR A  89
VAL A 134
TRP A 136
LYS A 182
HIS A 219
ASP A 244
ASP A 254
 None
 0.70A 4xiaA-1bxcA:
52.3		 4xiaA-1bxcA:
51.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1de6 L-RHAMNOSE ISOMERASE

(Escherichia
coli) 		PF06134
(RhaA) 		6 TRP A  48
HIS A 103
TRP A 193
LYS A 236
HIS A 270
ASP A 334
 RNS  A1462 ( 4.1A)
RNS  A1462 (-4.4A)
RNS  A1462 (-3.2A)
RNS  A1462 (-2.2A)
RNS  A1462 ( 3.5A)
RNS  A1462 ( 3.0A)
 0.65A 4xiaA-1de6A:
26.7		 4xiaA-1de6A:
23.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ktc XYLOSE ISOMERASE

(Pectobacterium
atrosepticum) 		PF01261
(AP_endonuc_2) 		7 TRP A  14
THR A  80
TRP A 126
LYS A 168
HIS A 204
ASP A 229
ASP A 270
 UNL  A 337 ( 3.9A)
UNL  A 337 ( 3.8A)
UNL  A 337 ( 3.7A)
UNL  A 337 ( 2.9A)
FE  A 333 (-3.3A)
FE  A 334 (-3.1A)
FE  A 334 (-2.9A)
 0.55A 4xiaA-3ktcA:
36.0		 4xiaA-3ktcA:
26.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3p14 L-RHAMNOSE ISOMERASE

(Bacillus
halodurans) 		PF06134
(RhaA) 		5 TRP A  38
HIS A  93
TRP A 184
LYS A 227
ASP A 293
 None
 1.18A 4xiaA-3p14A:
27.3		 4xiaA-3p14A:
23.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3p14 L-RHAMNOSE ISOMERASE

(Bacillus
halodurans) 		PF06134
(RhaA) 		6 TRP A  38
HIS A  93
TRP A 184
LYS A 227
HIS A 261
ASP A 325
 None
 0.65A 4xiaA-3p14A:
27.3		 4xiaA-3p14A:
23.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gji L-RHAMNOSE ISOMERASE

(Pseudomonas
stutzeri) 		no annotation 5 TRP A  57
TRP A 179
LYS A 221
HIS A 257
ASP A 327
 RNS  A1001 (-3.5A)
RNS  A1001 (-3.3A)
RNS  A1001 (-2.7A)
MN  A1004 ( 3.4A)
RNS  A1001 ( 2.8A)
 0.29A 4xiaA-4gjiA:
33.8		 4xiaA-4gjiA:
24.35
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4xia D-XYLOSE ISOMERASE

(Arthrobacter
sp. NRRL B3728) 		PF01261
(AP_endonuc_2) 		6 MET A  87
THR A  89
TRP A 136
GLU A 216
HIS A 219
ASP A 292
 SOR  A 400 ( 4.4A)
SOR  A 400 (-3.3A)
SOR  A 400 (-3.8A)
MG  A 399 ( 2.8A)
SOR  A 400 (-4.1A)
SOR  A 400 ( 2.7A)
 1.41A 4xiaA-4xiaA:
65.0		 4xiaA-4xiaA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4xia D-XYLOSE ISOMERASE

(Arthrobacter
sp. NRRL B3728) 		PF01261
(AP_endonuc_2) 		12 TRP A  15
HIS A  53
MET A  87
THR A  89
VAL A 134
TRP A 136
LYS A 182
GLU A 216
HIS A 219
ASP A 244
ASP A 254
ASP A 292
 SOR  A 400 (-4.0A)
SOR  A 400 (-4.0A)
SOR  A 400 ( 4.4A)
SOR  A 400 (-3.3A)
SOR  A 400 (-4.5A)
SOR  A 400 (-3.8A)
SOR  A 400 (-2.9A)
MG  A 399 ( 2.8A)
SOR  A 400 (-4.1A)
MG  A 399 ( 3.1A)
SOR  A 400 ( 4.8A)
SOR  A 400 ( 2.7A)
 0.02A 4xiaA-4xiaA:
65.0		 4xiaA-4xiaA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xkm XYLOSE ISOMERASE

(Bacteroides
thetaiotaomicron) 		no annotation 5 HIS A 103
THR A 143
TRP A 190
ASP A 309
ASP A 298
 None
None
None
MN  A 502 (-3.3A)
MN  A 501 (-3.2A)
 1.37A 4xiaA-4xkmA:
38.9		 4xiaA-4xkmA:
26.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xkm XYLOSE ISOMERASE

(Bacteroides
thetaiotaomicron) 		no annotation 6 HIS A 103
THR A 143
TRP A 190
GLU A 270
HIS A 273
ASP A 298
 None
None
None
MN  A 502 ( 2.5A)
MN  A 502 (-4.2A)
MN  A 501 (-3.2A)
 1.35A 4xiaA-4xkmA:
38.9		 4xiaA-4xkmA:
26.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xkm XYLOSE ISOMERASE

(Bacteroides
thetaiotaomicron) 		no annotation 8 TRP A  51
HIS A 103
THR A 143
VAL A 188
TRP A 190
LYS A 236
ASP A 309
ASP A 341
 None
None
None
None
None
None
MN  A 502 (-3.3A)
MN  A 501 (-3.1A)
 0.82A 4xiaA-4xkmA:
38.9		 4xiaA-4xkmA:
26.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xkm XYLOSE ISOMERASE

(Bacteroides
thetaiotaomicron) 		no annotation 10 TRP A  51
HIS A 103
THR A 143
VAL A 188
TRP A 190
LYS A 236
GLU A 270
HIS A 273
ASP A 298
ASP A 341
 None
None
None
None
None
None
MN  A 502 ( 2.5A)
MN  A 502 (-4.2A)
MN  A 501 (-3.2A)
MN  A 501 (-3.1A)
 0.45A 4xiaA-4xkmA:
38.9		 4xiaA-4xkmA:
26.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bk6 PUTATIVE AMIDASE

(Rhizobium
leguminosarum) 		no annotation 5 HIS A 205
THR A 172
VAL A 176
LYS A 213
ASP A  15
 None
 1.45A 4xiaA-5bk6A:
undetectable		 4xiaA-5bk6A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nhb XYLOSE ISOMERASE

(Piromyces sp.
E2) 		no annotation 6 HIS A 102
THR A 142
TRP A 189
GLU A 269
HIS A 272
ASP A 297
 None
None
None
FE2  A 502 ( 2.3A)
FE2  A 502 (-3.6A)
FE2  A 501 (-3.0A)
 1.30A 4xiaA-5nhbA:
40.1		 4xiaA-5nhbA:
26.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nhb XYLOSE ISOMERASE

(Piromyces sp.
E2) 		no annotation 6 HIS A 102
THR A 142
TRP A 189
HIS A 272
ASP A 308
ASP A 297
 None
None
None
FE2  A 502 (-3.6A)
FE2  A 502 (-3.2A)
FE2  A 501 (-3.0A)
 1.32A 4xiaA-5nhbA:
40.1		 4xiaA-5nhbA:
26.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nhb XYLOSE ISOMERASE

(Piromyces sp.
E2) 		no annotation 10 TRP A  50
HIS A 102
THR A 142
VAL A 187
TRP A 189
LYS A 235
GLU A 269
HIS A 272
ASP A 297
ASP A 340
 None
None
None
None
None
FE2  A 502 ( 4.1A)
FE2  A 502 ( 2.3A)
FE2  A 502 (-3.6A)
FE2  A 501 (-3.0A)
FE2  A 501 ( 3.2A)
 0.49A 4xiaA-5nhbA:
40.1		 4xiaA-5nhbA:
26.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nhb XYLOSE ISOMERASE

(Piromyces sp.
E2) 		no annotation 8 TRP A  50
HIS A 102
THR A 142
VAL A 187
TRP A 189
LYS A 235
HIS A 272
ASP A 308
 None
None
None
None
None
FE2  A 502 ( 4.1A)
FE2  A 502 (-3.6A)
FE2  A 502 (-3.2A)
 0.82A 4xiaA-5nhbA:
40.1		 4xiaA-5nhbA:
26.96
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5y4j XYLOSE ISOMERASE

(Streptomyces
rubiginosus) 		PF01261
(AP_endonuc_2) 		6 HIS A  54
THR A  90
TRP A 137
GLU A 217
HIS A 220
ASP A 245
 XYL  A 402 (-3.8A)
XYL  A 402 ( 4.1A)
XYL  A 402 (-3.8A)
MG  A 401 ( 2.8A)
XYL  A 402 (-4.2A)
MG  A 401 ( 3.0A)
 1.30A 4xiaA-5y4jA:
57.1		 4xiaA-5y4jA:
65.31
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5y4j XYLOSE ISOMERASE

(Streptomyces
rubiginosus) 		PF01261
(AP_endonuc_2) 		6 MET A  88
THR A  90
TRP A 137
GLU A 217
HIS A 220
ASP A 287
 None
XYL  A 402 ( 4.1A)
XYL  A 402 (-3.8A)
MG  A 401 ( 2.8A)
XYL  A 402 (-4.2A)
XYL  A 402 ( 2.9A)
 1.41A 4xiaA-5y4jA:
57.1		 4xiaA-5y4jA:
65.31
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5y4j XYLOSE ISOMERASE

(Streptomyces
rubiginosus) 		PF01261
(AP_endonuc_2) 		12 TRP A  16
HIS A  54
MET A  88
THR A  90
VAL A 135
TRP A 137
LYS A 183
GLU A 217
HIS A 220
ASP A 245
ASP A 255
ASP A 287
 XYL  A 402 (-4.1A)
XYL  A 402 (-3.8A)
None
XYL  A 402 ( 4.1A)
None
XYL  A 402 (-3.8A)
XYL  A 402 (-2.8A)
MG  A 401 ( 2.8A)
XYL  A 402 (-4.2A)
MG  A 401 ( 3.0A)
XYL  A 402 ( 4.9A)
XYL  A 402 ( 2.9A)
 0.19A 4xiaA-5y4jA:
57.1		 4xiaA-5y4jA:
65.31