SIMILAR PATTERNS OF AMINO ACIDS FOR 4W5Q_A_IPHA903

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cjy PROTEIN (CYTOSOLIC
PHOSPHOLIPASE A2)

(Homo sapiens) 		PF00168
(C2)
PF01735
(PLA2_B) 		4 TYR A 213
PRO A 325
LEU A 237
TYR A 238
 None
 1.36A 4w5qA-1cjyA:
2.1		 4w5qA-1cjyA:
22.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1egj CYTOKINE RECEPTOR
COMMON BETA CHAIN
PRECURSOR

(Homo sapiens) 		PF00041
(fn3) 		4 TYR A 354
PRO A 400
LEU A 356
TYR A 376
 None
 1.42A 4w5qA-1egjA:
undetectable		 4w5qA-1egjA:
8.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fbl FIBROBLAST
(INTERSTITIAL)
COLLAGENASE (MMP-1)

(Sus scrofa) 		PF00045
(Hemopexin)
PF00413
(Peptidase_M10) 		4 TYR A 348
LYS A 362
PRO A 361
LEU A 357
 None
 1.45A 4w5qA-1fblA:
3.1		 4w5qA-1fblA:
16.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1su3 INTERSTITIAL
COLLAGENASE

(Homo sapiens) 		PF00045
(Hemopexin)
PF00413
(Peptidase_M10)
PF01471
(PG_binding_1) 		4 TYR A 348
LYS A 362
PRO A 361
LEU A 357
 None
 1.47A 4w5qA-1su3A:
2.6		 4w5qA-1su3A:
19.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xdz METHYLTRANSFERASE
GIDB

(Bacillus
subtilis) 		PF02527
(GidB) 		4 TYR A  51
PRO A  86
LEU A  32
TYR A  28
 None
 1.36A 4w5qA-1xdzA:
undetectable		 4w5qA-1xdzA:
13.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2g5t DIPEPTIDYL PEPTIDASE
4

(Homo sapiens) 		PF00326
(Peptidase_S9)
PF00930
(DPPIV_N) 		4 TYR A 132
PRO A 149
LEU A 164
TYR A 166
 None
 1.31A 4w5qA-2g5tA:
0.4		 4w5qA-2g5tA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gdq YITF

(Bacillus
subtilis) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		4 TYR A 195
PRO A 221
LEU A 231
TYR A 228
 None
 1.43A 4w5qA-2gdqA:
0.0		 4w5qA-2gdqA:
17.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2i9k MODIFICATION
METHYLASE HHAI

(Haemophilus
haemolyticus) 		PF00145
(DNA_methylase) 		4 LYS A 112
PRO A 113
LEU A 143
TYR A 145
 None
 1.02A 4w5qA-2i9kA:
2.8		 4w5qA-2i9kA:
18.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2iuk SEED LIPOXYGENASE

(Glycine max) 		PF00305
(Lipoxygenase)
PF01477
(PLAT) 		4 TYR A 317
PRO A 352
LEU A 774
TYR A 724
 None
 1.36A 4w5qA-2iukA:
1.2		 4w5qA-2iukA:
22.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a2f DNA POLYMERASE

(Pyrococcus
furiosus) 		PF00136
(DNA_pol_B)
PF03104
(DNA_pol_B_exo1) 		4 TYR A 500
LYS A 502
PRO A 372
LEU A 381
 None
 1.48A 4w5qA-3a2fA:
undetectable		 4w5qA-3a2fA:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a2f DNA POLYMERASE

(Pyrococcus
furiosus) 		PF00136
(DNA_pol_B)
PF03104
(DNA_pol_B_exo1) 		4 TYR A 654
PRO A 723
LEU A 661
TYR A 721
 None
 1.04A 4w5qA-3a2fA:
undetectable		 4w5qA-3a2fA:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bga BETA-GALACTOSIDASE

(Bacteroides
thetaiotaomicron) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF02929
(Bgal_small_N)
PF16353
(DUF4981) 		4 TYR A 525
PRO A 999
LEU A 546
TYR A 563
 None
 1.47A 4w5qA-3bgaA:
3.6		 4w5qA-3bgaA:
22.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dec BETA-GALACTOSIDASE

(Bacteroides
thetaiotaomicron) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF02929
(Bgal_small_N)
PF16353
(DUF4981) 		4 TYR A 501
PRO A 975
LEU A 522
TYR A 539
 None
 1.34A 4w5qA-3decA:
3.3		 4w5qA-3decA:
22.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k1d 1,4-ALPHA-GLUCAN-BRA
NCHING ENZYME

(Mycobacterium
tuberculosis) 		PF00128
(Alpha-amylase)
PF02806
(Alpha-amylase_C)
PF02922
(CBM_48) 		4 TYR A 363
PRO A 348
LEU A 392
TYR A 311
 None
 1.38A 4w5qA-3k1dA:
1.6		 4w5qA-3k1dA:
22.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ob8 BETA-GALACTOSIDASE

(Kluyveromyces
lactis) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF02929
(Bgal_small_N) 		4 TYR A 523
PRO A1003
LEU A 549
TYR A 566
 None
 1.47A 4w5qA-3ob8A:
undetectable		 4w5qA-3ob8A:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ozx RNASE L INHIBITOR

(Sulfolobus
solfataricus) 		PF00005
(ABC_tran) 		4 TYR A 417
PRO A 415
LEU A 468
TYR A 469
 None
 1.29A 4w5qA-3ozxA:
undetectable		 4w5qA-3ozxA:
20.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pnt IMMUNITY FACTOR FOR
SPN

(Streptococcus
pyogenes) 		PF16718
(IFS) 		4 TYR B  56
PRO B  60
LEU B 102
TYR B   2
 None
 1.19A 4w5qA-3pntB:
undetectable		 4w5qA-3pntB:
10.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rt2 ABSCISIC ACID
RECEPTOR PYL10

(Arabidopsis
thaliana) 		PF10604
(Polyketide_cyc2) 		4 TYR A  55
LYS A  56
PRO A  57
LEU A 164
 None
 1.41A 4w5qA-3rt2A:
undetectable		 4w5qA-3rt2A:
11.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3s25 HYPOTHETICAL
7-BLADED
BETA-PROPELLER-LIKE
PROTEIN

([Eubacterium]
rectale) 		PF16472
(DUF5050) 		4 TYR A 216
LYS A 217
PRO A 218
TYR A  44
 None
None
None
EDO  A 334 (-4.4A)
 1.20A 4w5qA-3s25A:
undetectable		 4w5qA-3s25A:
16.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4f3e CASA

(Thermus
thermophilus) 		PF09481
(CRISPR_Cse1) 		4 TYR A 206
PRO A 276
LEU A  57
TYR A 241
 None
 1.48A 4w5qA-4f3eA:
undetectable		 4w5qA-4f3eA:
20.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ft2 DNA
(CYTOSINE-5)-METHYLT
RANSFERASE 1

(Zea mays) 		PF00145
(DNA_methylase)
PF00385
(Chromo)
PF01426
(BAH) 		4 LYS A 552
PRO A 553
LEU A 580
TYR A 585
 None
 1.30A 4w5qA-4ft2A:
3.5		 4w5qA-4ft2A:
22.71
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4krf PROTEIN ARGONAUTE-1

(Homo sapiens) 		PF02170
(PAZ)
PF02171
(Piwi)
PF08699
(ArgoL1)
PF16486
(ArgoN)
PF16487
(ArgoMid)
PF16488
(ArgoL2) 		4 TYR A 652
PRO A 659
LEU A 692
TYR A 696
 None
 0.42A 4w5qA-4krfA:
53.7		 4w5qA-4krfA:
82.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4mb7 ENDONUCLEASE 8-LIKE
L720

(Acanthamoeba
polyphaga
mimivirus) 		PF06831
(H2TH) 		4 LYS A  61
PRO A  62
LEU A  37
TYR A  40
 None
 1.50A 4w5qA-4mb7A:
undetectable		 4w5qA-4mb7A:
15.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a5g FORMATE--TETRAHYDROF
OLATE LIGASE

(Tepidanaerobacter
acetatoxydans) 		PF01268
(FTHFS) 		4 TYR A  44
LYS A 254
PRO A 255
LEU A  46
 None
 1.40A 4w5qA-5a5gA:
5.7		 4w5qA-5a5gA:
20.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i6h ACETYL-COA
CARBOXYLASE-LIKE
PROTEIN

(Chaetomium
thermophilum) 		PF01039
(Carboxyl_trans)
PF08326
(ACC_central) 		4 TYR A1127
PRO A1126
LEU A1102
TYR A1120
 None
 1.20A 4w5qA-5i6hA:
2.4		 4w5qA-5i6hA:
20.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i6i ACETYL-COA
CARBOXYLASE-LIKE
PROTEIN,ACETYL-COA
CARBOXYLASE-LIKE
PROTEIN,ACETYL-COA
CARBOXYLASE-LIKE
PROTEIN

(Chaetomium
thermophilum) 		PF01039
(Carboxyl_trans)
PF08326
(ACC_central) 		4 TYR A1127
PRO A1126
LEU A1102
TYR A1120
 None
 1.27A 4w5qA-5i6iA:
2.4		 4w5qA-5i6iA:
17.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i85 SPHINGOMYELIN
PHOSPHODIESTERASE

(Homo sapiens) 		PF00149
(Metallophos) 		4 TYR A 274
PRO A 314
LEU A 369
TYR A 367
 None
 1.28A 4w5qA-5i85A:
2.6		 4w5qA-5i85A:
22.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5vm9 PROTEIN ARGONAUTE-3

(Homo sapiens) 		no annotation 5 TYR A 655
LYS A 661
PRO A 662
LEU A 695
TYR A 699
 None
 0.77A 4w5qA-5vm9A:
50.1		 4w5qA-5vm9A:
79.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wea PROTEIN ARGONAUTE-2

(Homo sapiens) 		no annotation 5 TYR A 654
LYS A 660
PRO A 661
LEU A 694
TYR A 698
 None
None
None
IPH  A 901 (-3.9A)
IPH  A 901 ( 4.9A)
 0.71A 4w5qA-5weaA:
53.2		 4w5qA-5weaA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cbl NEAMINE TRANSAMINASE
NEON

(Streptomyces
fradiae) 		no annotation 4 TYR A 212
PRO A 177
LEU A 221
TYR A 187
 None
 1.48A 4w5qA-6cblA:
undetectable		 4w5qA-6cblA:
undetectable