SIMILAR PATTERNS OF AMINO ACIDS FOR 4UMJ_A_BFQA1298

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jym PEPTIDE DEFORMYLASE

(Plasmodium
falciparum) 		PF01327
(Pep_deformylase) 		4 ILE A 172
PHE A 198
GLN A 195
ASP A 199
 None
 1.35A 4umjA-1jymA:
undetectable		 4umjA-1jymA:
20.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1obp ODORANT-BINDING
PROTEIN

(Bos taurus) 		PF00061
(Lipocalin) 		4 ILE A  91
PHE A  45
GLN A   8
ASP A  47
 None
 1.38A 4umjA-1obpA:
undetectable		 4umjA-1obpA:
18.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2egc SH3 AND PX
DOMAIN-CONTAINING
PROTEIN 2A

(Homo sapiens) 		PF07653
(SH3_2) 		4 ILE A  49
PHE A  28
GLN A  29
ASP A  18
 None
 1.22A 4umjA-2egcA:
undetectable		 4umjA-2egcA:
15.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3inz PROTEIN HFQ

(Pseudomonas
aeruginosa) 		PF17209
(Hfq) 		4 ILE A  44
PHE A  39
GLN A   8
ASP A   9
 None
None
None
CD  A  83 (-2.2A)
 1.49A 4umjA-3inzA:
undetectable		 4umjA-3inzA:
17.49
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3lom GERANYLTRANSTRANSFER
ASE

(Legionella
pneumophila) 		PF00348
(polyprenyl_synt) 		4 ILE A 197
PHE A 230
GLN A 231
ASP A 234
 None
 1.06A 4umjA-3lomA:
33.2		 4umjA-3lomA:
38.99
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3npk GERANYLTRANSTRANSFER
ASE

(Campylobacter
jejuni) 		PF00348
(polyprenyl_synt) 		4 ILE A 177
PHE A 209
GLN A 210
ASP A 213
 None
 0.79A 4umjA-3npkA:
32.5		 4umjA-3npkA:
34.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ojx 3',5'-CYCLIC-NUCLEOT
IDE
PHOSPHODIESTERASE 1

(Saccharomyces
cerevisiae) 		PF02112
(PDEase_II) 		4 ILE A 155
PHE A 170
GLN A 166
ASP A 177
 None
 1.27A 4umjA-4ojxA:
0.0		 4umjA-4ojxA:
20.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4p3i P DOMAIN OF VP1

(Norwalk virus) 		PF00915
(Calici_coat)
PF08435
(Calici_coat_C) 		4 ILE A 417
PHE A 266
GLN A 267
ASP A 327
 None
 1.33A 4umjA-4p3iA:
undetectable		 4umjA-4p3iA:
21.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5h9d FARNESYL
PYROPHOSPHATE
SYNTHETASE

(Staphylococcus
aureus) 		PF00348
(polyprenyl_synt) 		4 ILE A 173
PHE A 205
GLN A 206
ASP A 209
 None
 1.19A 4umjA-5h9dA:
27.9		 4umjA-5h9dA:
28.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i2t PERIODIC TRYPTOPHAN
PROTEIN 2

(Saccharomyces
cerevisiae) 		PF00400
(WD40) 		4 ILE A 172
PHE A 160
GLN A 203
ASP A 157
 None
 1.25A 4umjA-5i2tA:
undetectable		 4umjA-5i2tA:
16.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5jfq GERANYLGERANYL
PYROPHOSPHATE
SYNTHETASE

(Geoglobus
acetivorans) 		PF00348
(polyprenyl_synt) 		4 ILE A 177
PHE A 209
GLN A 210
ASP A 213
 None
 1.26A 4umjA-5jfqA:
32.6		 4umjA-5jfqA:
35.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5zut PROLIFERATING CELL
NUCLEAR ANTIGEN

(Saccharomyces
cerevisiae) 		no annotation 4 ILE A 128
PHE A 245
GLN A 238
ASP A 240
 None
 1.30A 4umjA-5zutA:
0.0		 4umjA-5zutA:
13.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fc0 EUKARYOTIC
TRANSLATION
INITIATION FACTOR 4G

(Chaetomium
thermophilum) 		no annotation 4 ILE B 980
PHE B1004
GLN B1003
ASP B1001
 None
 0.99A 4umjA-6fc0B:
undetectable		 4umjA-6fc0B:
16.00