SIMILAR PATTERNS OF AMINO ACIDS FOR 4RP9_A_ASCA501_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1b25 PROTEIN
(FORMALDEHYDE
FERREDOXIN
OXIDOREDUCTASE)

(Pyrococcus
furiosus) 		PF01314
(AFOR_C)
PF02730
(AFOR_N) 		5 THR A 513
ILE A  32
ALA A 490
ILE A 512
PHE A  65
 None
 1.37A 4rp9A-1b25A:
undetectable		 4rp9A-1b25A:
22.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cj0 PROTEIN (SERINE
HYDROXYMETHYLTRANSFE
RASE)

(Oryctolagus
cuniculus) 		PF00464
(SHMT) 		5 THR A 138
HIS A 129
ILE A 171
ASP A 200
ALA A 202
 None
None
None
PLP  A2291 (-3.0A)
PLP  A2291 (-3.4A)
 1.45A 4rp9A-1cj0A:
0.0		 4rp9A-1cj0A:
22.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1e6y METHYL-COENZYME M
REDUCTASE SUBUNIT
GAMMA

(Methanosarcina
barkeri) 		PF02240
(MCR_gamma) 		5 GLN C3087
ASP C3090
ALA C3149
ILE C3086
PHE C3088
 None
 1.34A 4rp9A-1e6yC:
0.0		 4rp9A-1e6yC:
18.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1idu VANADIUM
CHLOROPEROXIDASE

(Curvularia
inaequalis) 		PF01569
(PAP2) 		5 ILE A 533
ASP A 506
ALA A 503
ILE A 557
MET A 483
 None
 1.27A 4rp9A-1iduA:
0.0		 4rp9A-1iduA:
22.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2a0u INITIATION FACTOR 2B

(Leishmania
major) 		PF01008
(IF-2B) 		5 THR A 219
GLN A 224
ASP A 265
ALA A 274
ILE A 184
 None
SO4  A 402 (-4.2A)
SO4  A 402 ( 4.3A)
None
None
 1.47A 4rp9A-2a0uA:
undetectable		 4rp9A-2a0uA:
21.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2dy3 ALANINE RACEMASE

(Corynebacterium
glutamicum) 		PF00842
(Ala_racemase_C)
PF01168
(Ala_racemase_N) 		5 HIS A 149
ILE A 150
ALA A 108
ILE A  92
PHE A  88
 None
 1.18A 4rp9A-2dy3A:
0.0		 4rp9A-2dy3A:
21.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2eja UROPORPHYRINOGEN
DECARBOXYLASE

(Aquifex
aeolicus) 		PF01208
(URO-D) 		5 ILE A 235
GLN A 276
GLN A 197
ALA A 193
ILE A  71
 None
 1.40A 4rp9A-2ejaA:
0.0		 4rp9A-2ejaA:
22.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2inc TOLUENE, O-XYLENE
MONOOXYGENASE
OXYGENASE SUBUNIT

(Pseudomonas
stutzeri) 		PF02332
(Phenol_Hydrox)
PF04945
(YHS) 		5 THR A 273
HIS A  96
GLN A 204
ALA A 212
ILE A 276
 P6G  A 503 (-3.3A)
P6G  A 503 (-4.5A)
P6G  A 503 (-3.1A)
None
P6G  A 503 (-4.2A)
 1.43A 4rp9A-2incA:
0.0		 4rp9A-2incA:
22.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2inf UROPORPHYRINOGEN
DECARBOXYLASE

(Bacillus
subtilis) 		PF01208
(URO-D) 		5 ILE A 242
GLN A 284
GLN A 205
ALA A 201
ILE A  74
 None
 1.40A 4rp9A-2infA:
0.0		 4rp9A-2infA:
21.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2p5t PEZT

(Streptococcus
pneumoniae) 		PF06414
(Zeta_toxin) 		5 ILE B  35
GLN B 139
ALA B 128
ILE B 200
PHE B 197
 None
 1.27A 4rp9A-2p5tB:
undetectable		 4rp9A-2p5tB:
20.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qt3 N-ISOPROPYLAMMELIDE
ISOPROPYL
AMIDOHYDROLASE

(Pseudomonas sp.
ADP) 		PF01979
(Amidohydro_1) 		5 ILE A 339
CYH A 300
ALA A 301
ILE A 323
PHE A 279
 None
 1.36A 4rp9A-2qt3A:
undetectable		 4rp9A-2qt3A:
22.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yrf METHYLTHIORIBOSE-1-P
HOSPHATE ISOMERASE

(Bacillus
subtilis) 		PF01008
(IF-2B) 		5 THR A 194
GLN A 199
ASP A 240
ALA A 249
ILE A 159
 None
SO4  A 501 (-4.7A)
SO4  A 501 ( 3.9A)
None
None
 1.36A 4rp9A-2yrfA:
undetectable		 4rp9A-2yrfA:
21.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3c8w ACETOACETATE
DECARBOXYLASE ADC

(Legionella
pneumophila) 		PF06314
(ADC) 		5 HIS A 218
ILE A 148
ALA A 128
ILE A 223
PHE A 107
 None
 1.45A 4rp9A-3c8wA:
undetectable		 4rp9A-3c8wA:
18.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e15 GLUCOSE-6-PHOSPHATE
1-DEHYDROGENASE

(Plasmodium
vivax) 		PF01182
(Glucosamine_iso) 		5 TYR A  68
ILE A  88
ASP A  90
ALA A 165
ILE A 155
 None
 1.32A 4rp9A-3e15A:
undetectable		 4rp9A-3e15A:
18.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gtu GLUTATHIONE
S-TRANSFERASE

(Homo sapiens) 		PF00043
(GST_C)
PF02798
(GST_N) 		5 TYR B 119
ILE B 211
GLN B 169
ALA B  17
ILE B 115
 None
 1.48A 4rp9A-3gtuB:
undetectable		 4rp9A-3gtuB:
17.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3va8 PROBABLE DEHYDRATASE

(Fusarium
graminearum) 		PF13378
(MR_MLE_C) 		5 HIS A  57
CYH A  83
ALA A  64
ILE A  38
PHE A 115
 None
 1.42A 4rp9A-3va8A:
undetectable		 4rp9A-3va8A:
20.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4aqs LAMININ SUBUNIT
BETA-1

(Mus musculus) 		PF00053
(Laminin_EGF)
PF00055
(Laminin_N) 		5 HIS A  94
GLN A 113
ASP A  92
ILE A  66
PHE A  77
 None
 1.07A 4rp9A-4aqsA:
undetectable		 4rp9A-4aqsA:
19.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gq2 NUCLEOPORIN NUP120

(Schizosaccharomyces
pombe) 		PF11715
(Nup160) 		5 THR M 531
HIS M 291
ILE M 352
ALA M 298
ILE M 522
 None
 1.47A 4rp9A-4gq2M:
undetectable		 4rp9A-4gq2M:
20.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hoz SUCROSE ISOMERASE

(Erwinia
rhapontici) 		PF00128
(Alpha-amylase)
PF16657
(Malt_amylase_C) 		5 THR A 519
HIS A 513
GLN A  50
ASP A  88
ALA A  89
 None
 1.14A 4rp9A-4hozA:
undetectable		 4rp9A-4hozA:
19.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4iiw LMO1499 PROTEIN

(Listeria
monocytogenes) 		PF02618
(YceG) 		5 THR A 208
TYR A 184
ALA A 315
ILE A 212
PHE A 229
 None
 1.47A 4rp9A-4iiwA:
undetectable		 4rp9A-4iiwA:
21.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4n4w CYTOCHROME
B(562),SMOOTHENED
HOMOLOG

(Shigella
flexneri;
Homo sapiens) 		PF01534
(Frizzled)
PF07361
(Cytochrom_B562) 		5 TYR A 262
HIS A 361
CYH A 273
ALA A 272
ILE A 266
 None
OLC  A 609 (-3.7A)
None
None
None
 1.40A 4rp9A-4n4wA:
undetectable		 4rp9A-4n4wA:
23.85
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4rp8 ASCORBATE-SPECIFIC
PERMEASE IIC
COMPONENT ULAA

(Escherichia
coli) 		PF03611
(EIIC-GAT) 		12 THR A  86
TYR A  87
HIS A 135
ILE A 136
GLN A 139
GLN A 195
ASP A 314
CYH A 315
ALA A 316
ILE A 358
PHE A 362
MET A 410
 ASC  A 501 (-3.3A)
ASC  A 501 (-3.9A)
ASC  A 501 (-4.1A)
None
ASC  A 501 (-2.5A)
ASC  A 501 (-4.0A)
ASC  A 501 (-2.7A)
ASC  A 501 ( 4.5A)
ASC  A 501 ( 3.7A)
ASC  A 501 ( 4.9A)
ASC  A 501 (-3.4A)
ASC  A 501 (-4.1A)
 0.11A 4rp9A-4rp8A:
67.4		 4rp9A-4rp8A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4uop LIPOTEICHOIC ACID
PRIMASE

(Listeria
monocytogenes) 		PF00884
(Sulfatase) 		5 THR A 279
TYR A 332
HIS A 325
ILE A 390
GLN A 235
 MG  A1612 (-2.8A)
None
None
None
None
 1.39A 4rp9A-4uopA:
undetectable		 4rp9A-4uopA:
20.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4w5k ASPARTATE
AMINOTRANSFERASE,
MITOCHONDRIAL

(Trypanosoma
brucei) 		PF00155
(Aminotran_1_2) 		5 HIS A 123
ASP A 201
ALA A 232
ILE A 113
PHE A 199
 None
PLP  A 500 (-2.7A)
None
None
None
 1.41A 4rp9A-4w5kA:
undetectable		 4rp9A-4w5kA:
20.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4who PROTOCATECHUATE
3,4-DIOXYGENASE
ALPHA CHAIN

(Pseudomonas
putida) 		PF00775
(Dioxygenase_C) 		5 THR A 108
ILE A 126
GLN A  72
ALA A 172
ILE A  49
 None
 1.13A 4rp9A-4whoA:
undetectable		 4rp9A-4whoA:
17.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bni UNCHARACTERIZED
PROTEIN

(Sus scrofa) 		PF02267
(Rib_hydrolayse) 		5 ILE A 173
GLN A  64
ALA A  97
ILE A  67
PHE A  94
 None
 1.25A 4rp9A-5bniA:
undetectable		 4rp9A-5bniA:
17.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ijz NADP-SPECIFIC
GLUTAMATE
DEHYDROGENASE

(Corynebacterium
glutamicum) 		PF00208
(ELFV_dehydrog)
PF02812
(ELFV_dehydrog_N) 		5 THR A 415
TYR A 419
ASP A 439
ALA A 438
ILE A 431
 None
 1.11A 4rp9A-5ijzA:
undetectable		 4rp9A-5ijzA:
20.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5tvl FOLDASE PROTEIN PRSA

(Streptococcus
pneumoniae) 		PF13145
(Rotamase_2) 		5 TYR A 273
GLN A 247
ALA A  96
ILE A  37
PHE A  41
 None
 1.49A 4rp9A-5tvlA:
undetectable		 4rp9A-5tvlA:
18.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vn6 TAURINE DIOXYGENASE

(Burkholderia
ambifaria) 		PF02668
(TauD) 		5 HIS A 258
GLN A 257
ASP A 100
ALA A 101
PHE A 198
 MG  A 300 (-3.3A)
None
MG  A 300 (-2.7A)
None
None
 1.31A 4rp9A-5vn6A:
undetectable		 4rp9A-5vn6A:
19.49
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5zov -

(-) 		no annotation 11 TYR A  87
HIS A 135
ILE A 136
GLN A 139
GLN A 195
ASP A 314
CYH A 315
ALA A 316
ILE A 358
PHE A 362
MET A 415
 ASC  A 501 (-4.0A)
ASC  A 501 (-4.0A)
None
ASC  A 501 (-3.1A)
ASC  A 501 (-4.2A)
ASC  A 501 (-2.7A)
ASC  A 501 ( 4.3A)
ASC  A 501 (-3.6A)
ASC  A 501 ( 4.9A)
ASC  A 501 (-3.8A)
ASC  A 501 ( 4.6A)
 0.35A 4rp9A-5zovA:
40.9		 4rp9A-5zovA:
62.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6b9s METHYLPHOSPHONATE
SYNTHASE

(Nitrosopumilus
maritimus) 		no annotation 5 THR A 154
HIS A 190
ILE A 184
GLN A 152
ILE A 204
 None
FE  A 501 (-3.6A)
None
FE  A 501 (-2.9A)
None
 1.45A 4rp9A-6b9sA:
undetectable		 4rp9A-6b9sA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6c0b FRIZZLED-2

(Homo sapiens) 		no annotation 5 THR B  55
TYR B  52
ILE B  44
GLN B  66
MET B  57
 None
 1.50A 4rp9A-6c0bB:
undetectable		 4rp9A-6c0bB:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cn1 UDP-N-ACETYLGLUCOSAM
INE
1-CARBOXYVINYLTRANSF
ERASE

(Pseudomonas
putida) 		no annotation 5 THR A 299
GLN A 310
ASP A 372
ILE A 330
PHE A 331
 None
None
None
EPU  A 501 (-4.8A)
EPU  A 501 (-4.8A)
 1.39A 4rp9A-6cn1A:
undetectable		 4rp9A-6cn1A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6d35 SMOOTHENED,SOLUBLE
CYTOCHROME
B562,SMOOTHENED

(Escherichia
coli;
Xenopus laevis) 		no annotation 5 TYR A 235
HIS A 334
CYH A 246
ALA A 245
ILE A 239
 None
 1.40A 4rp9A-6d35A:
0.5		 4rp9A-6d35A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6g0c UBIQUITINATING/DEUBI
QUITINATING ENZYME
SDEA

(Legionella
pneumophila) 		no annotation 5 ILE A 403
GLN A 330
ALA A 335
ILE A 328
PHE A 332
 None
 1.48A 4rp9A-6g0cA:
undetectable		 4rp9A-6g0cA:
undetectable