SIMILAR PATTERNS OF AMINO ACIDS FOR 4QZU_B_RTLB201

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1ggl PROTEIN (CELLULAR
RETINOL-BINDING
PROTEIN III)

(Homo sapiens) 		PF00061
(Lipocalin) 		6 ALA A  33
LYS A  40
THR A  53
TYR A  60
TRP A 106
LEU A 117
 None
 0.70A 4qzuB-1gglA:
23.6		 4qzuB-1gglA:
50.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ixp PYRIDOXINE
5'-PHOSPHATE
SYNTHASE

(Escherichia
coli) 		PF03740
(PdxJ) 		5 ALA A 178
THR A 156
TYR A 159
LEU A 172
LEU A 212
 None
 1.32A 4qzuB-1ixpA:
undetectable		 4qzuB-1ixpA:
20.54
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1kqx CELLULAR
RETINOL-BINDING
PROTEIN

(Danio rerio) 		PF00061
(Lipocalin) 		7 ALA A  33
GLN A  38
LYS A  40
THR A  53
LEU A  77
TRP A 106
LEU A 117
 None
 1.03A 4qzuB-1kqxA:
25.7		 4qzuB-1kqxA:
75.19
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1kqx CELLULAR
RETINOL-BINDING
PROTEIN

(Danio rerio) 		PF00061
(Lipocalin) 		8 PHE A  16
MET A  20
ALA A  33
GLN A  38
LYS A  40
THR A  53
TRP A 106
LEU A 117
 None
 0.55A 4qzuB-1kqxA:
25.7		 4qzuB-1kqxA:
75.19
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1lpj RETINOL-BINDING
PROTEIN IV, CELLULAR

(Homo sapiens) 		PF00061
(Lipocalin) 		8 PHE A  16
MET A  20
ALA A  33
LYS A  40
THR A  53
ARG A  58
TRP A 106
LEU A 117
 None
 0.85A 4qzuB-1lpjA:
25.1		 4qzuB-1lpjA:
58.65
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1lpj RETINOL-BINDING
PROTEIN IV, CELLULAR

(Homo sapiens) 		PF00061
(Lipocalin) 		8 PHE A  16
MET A  20
ALA A  33
LYS A  40
THR A  53
LEU A  77
TRP A 106
LEU A 117
 None
 0.76A 4qzuB-1lpjA:
25.1		 4qzuB-1lpjA:
58.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bra NEDD9 INTERACTING
PROTEIN WITH
CALPONIN HOMOLOGY
AND LIM DOMAINS

(Mus musculus) 		PF01494
(FAD_binding_3) 		5 ALA A 427
THR A  85
ARG A 385
LEU A 387
LEU A 106
 None
 1.49A 4qzuB-2braA:
0.0		 4qzuB-2braA:
13.63
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2cbr PROTEIN (CRABP-I)

(Bos taurus) 		PF00061
(Lipocalin) 		5 PHE A  15
ALA A  32
THR A  54
TRP A 109
LEU A 120
 None
A80  A 201 ( 4.1A)
A80  A 201 (-3.5A)
None
None
 0.65A 4qzuB-2cbrA:
20.3		 4qzuB-2cbrA:
35.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gsj PROTEIN PPL-2

(Parkia
platycephala) 		PF00704
(Glyco_hydro_18) 		5 PHE A 124
ALA A 137
ARG A  94
LEU A  87
LEU A  33
 None
 1.35A 4qzuB-2gsjA:
0.0		 4qzuB-2gsjA:
21.29
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2rcq RETINOL-BINDING
PROTEIN II, CELLULAR

(Homo sapiens) 		PF00061
(Lipocalin) 		6 ALA A  33
GLN A  38
LYS A  40
THR A  53
ARG A  58
LEU A 117
 None
None
None
None
SO4  A 152 (-3.1A)
None
 1.03A 4qzuB-2rcqA:
26.1		 4qzuB-2rcqA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2rcq RETINOL-BINDING
PROTEIN II, CELLULAR

(Homo sapiens) 		PF00061
(Lipocalin) 		9 PHE A  16
MET A  20
ALA A  33
GLN A  38
LYS A  40
THR A  53
LEU A  77
TRP A 106
LEU A 117
 None
 0.60A 4qzuB-2rcqA:
26.1		 4qzuB-2rcqA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vf1 CAPSID PROTEIN

(Rabbit
picobirnavirus) 		no annotation 5 PHE A 245
ALA A 145
TYR A 152
LEU A 584
LEU A 342
 None
 1.13A 4qzuB-2vf1A:
0.0		 4qzuB-2vf1A:
13.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wd5 STRUCTURAL
MAINTENANCE OF
CHROMOSOMES PROTEIN
3

(Mus musculus) 		PF06470
(SMC_hinge) 		5 PHE B 626
ALA B 553
ARG B 674
TYR B 546
LEU B 675
 None
 1.48A 4qzuB-2wd5B:
undetectable		 4qzuB-2wd5B:
21.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3puf RIBONUCLEASE H2
SUBUNIT B

(Homo sapiens) 		PF09468
(RNase_H2-Ydr279) 		5 ALA B 104
THR B 142
TYR B 156
LEU B 113
LEU B  94
 None
 1.35A 4qzuB-3pufB:
undetectable		 4qzuB-3pufB:
17.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3u0j TYPE III EFFECTOR
HOPU1

(Pseudomonas
syringae group
genomosp. 3) 		no annotation 5 PHE B 204
ALA B 213
GLN B 215
THR B 161
ARG B 164
 None
 1.26A 4qzuB-3u0jB:
undetectable		 4qzuB-3u0jB:
17.74
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3wbg FATTY ACID-BINDING
PROTEIN, HEART

(Homo sapiens) 		PF00061
(Lipocalin) 		5 PHE A  16
MET A  20
ALA A  33
THR A  53
LEU A 104
 2AN  A 201 ( 4.9A)
2AN  A 201 ( 3.9A)
2AN  A 201 (-3.8A)
2AN  A 201 ( 4.0A)
None
 1.33A 4qzuB-3wbgA:
21.1		 4qzuB-3wbgA:
37.18
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3wbg FATTY ACID-BINDING
PROTEIN, HEART

(Homo sapiens) 		PF00061
(Lipocalin) 		5 PHE A  16
MET A  20
ALA A  33
THR A  53
LEU A 115
 2AN  A 201 ( 4.9A)
2AN  A 201 ( 3.9A)
2AN  A 201 (-3.8A)
2AN  A 201 ( 4.0A)
None
 0.72A 4qzuB-3wbgA:
21.1		 4qzuB-3wbgA:
37.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4psn SSDNA BINDING
PROTEIN

(Aeropyrum
pernix) 		PF10015
(DUF2258) 		5 PHE A  82
ALA A  43
ARG A  19
TYR A  14
LEU A  87
 None
 1.48A 4qzuB-4psnA:
2.3		 4qzuB-4psnA:
20.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mpm SARCOPLASMIC/ENDOPLA
SMIC RETICULUM
CALCIUM ATPASE 2

(Sus scrofa) 		no annotation 5 MET A 239
ALA A 115
THR A 723
ARG A 334
LEU A 710
 None
 1.48A 4qzuB-5mpmA:
undetectable		 4qzuB-5mpmA:
undetectable