SIMILAR PATTERNS OF AMINO ACIDS FOR 4P6S_A_DAHA304_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1egz ENDOGLUCANASE Z

(Dickeya
chrysanthemi) 		PF00150
(Cellulase) 		4 ASN A 132
HIS A  98
GLU A 129
THR A 219
 None
 1.37A 4p6sA-1egzA:
0.1		 4p6sA-1egzA:
24.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1g01 ENDOGLUCANASE

(Bacillus sp.
KSM-635) 		PF00150
(Cellulase)
PF03424
(CBM_17_28) 		4 ASN A 372
HIS A 331
GLU A 369
THR A 484
 CD  A 591 ( 4.8A)
None
None
None
 1.48A 4p6sA-1g01A:
0.0		 4p6sA-1g01A:
23.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kqf FORMATE
DEHYDROGENASE,
NITRATE-INDUCIBLE,
MAJOR SUBUNIT

(Escherichia
coli) 		PF00384
(Molybdopterin)
PF01568
(Molydop_binding)
PF04879
(Molybdop_Fe4S4) 		4 ASN A 860
LEU A 862
HIS A 863
THR A 282
 None
 1.25A 4p6sA-1kqfA:
0.0		 4p6sA-1kqfA:
14.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1opk PROTO-ONCOGENE
TYROSINE-PROTEIN
KINASE ABL1

(Mus musculus) 		PF00017
(SH2)
PF00018
(SH3_1)
PF07714
(Pkinase_Tyr) 		4 ASN A 154
LEU A 360
GLU A 513
THR A 364
 None
MYR  A   1 (-4.5A)
None
None
 1.42A 4p6sA-1opkA:
0.0		 4p6sA-1opkA:
20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1tvp CELLULASE

(Pseudoalteromonas
haloplanktis) 		PF00150
(Cellulase) 		4 ASN A 134
HIS A 100
GLU A 131
THR A 221
 None
 1.40A 4p6sA-1tvpA:
0.3		 4p6sA-1tvpA:
21.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ckr ENDOGLUCANASE E-5

(Thermobifida
fusca) 		PF00150
(Cellulase) 		4 ASN A 262
HIS A 225
GLU A 259
THR A 354
 None
 1.43A 4p6sA-2ckrA:
0.9		 4p6sA-2ckrA:
19.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ify 2,3-BISPHOSPHOGLYCER
ATE-INDEPENDENT
PHOSPHOGLYCERATE
MUTASE

(Bacillus
anthracis) 		PF01676
(Metalloenzyme)
PF06415
(iPGM_N) 		4 ASN A 446
HIS A 406
GLU A 450
THR A 413
 None
MN  A 601 (-3.6A)
None
None
 1.41A 4p6sA-2ifyA:
0.0		 4p6sA-2ifyA:
18.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2j04 HYPOTHETICAL PROTEIN
YPL007C

(Saccharomyces
cerevisiae) 		PF12660
(zf-TFIIIC) 		4 ASN A  77
LEU A  80
GLU A 149
THR A 131
 None
 1.21A 4p6sA-2j04A:
0.0		 4p6sA-2j04A:
19.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2pff FATTY ACID SYNTHASE
SUBUNIT BETA

(Saccharomyces
cerevisiae) 		PF00698
(Acyl_transf_1)
PF16073
(SAT) 		4 ASN B 125
LEU B  60
GLU B  59
THR B  56
 None
 1.46A 4p6sA-2pffB:
0.0		 4p6sA-2pffB:
6.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2v7b BENZOATE-COENZYME A
LIGASE

(Paraburkholderia
xenovorans) 		PF00501
(AMP-binding)
PF13193
(AMP-binding_C) 		4 ASN A 419
LEU A 417
GLU A 350
THR A 353
 None
 1.20A 4p6sA-2v7bA:
undetectable		 4p6sA-2v7bA:
18.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fe3 MAP/MICROTUBULE
AFFINITY-REGULATING
KINASE 3

(Homo sapiens) 		PF00069
(Pkinase)
PF00627
(UBA) 		4 ASN A  55
LEU A  77
HIS A  75
GLU A 356
 None
 1.30A 4p6sA-3fe3A:
undetectable		 4p6sA-3fe3A:
21.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3iec SERINE/THREONINE-PRO
TEIN KINASE MARK2

(Homo sapiens) 		PF00069
(Pkinase)
PF00627
(UBA) 		4 ASN A  52
LEU A  74
HIS A  72
GLU A 353
 None
 1.38A 4p6sA-3iecA:
undetectable		 4p6sA-3iecA:
22.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pzu ENDOGLUCANASE

(Bacillus
subtilis) 		PF00150
(Cellulase) 		4 ASN A 168
HIS A 131
GLU A 165
THR A 256
 None
 1.43A 4p6sA-3pzuA:
undetectable		 4p6sA-3pzuA:
19.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qr1 PHOSPHOLIPASE C-BETA
(PLC-BETA)

(Doryteuthis
pealeii) 		PF00168
(C2)
PF00387
(PI-PLC-Y)
PF00388
(PI-PLC-X)
PF09279
(EF-hand_like) 		4 ASN A 339
HIS A 338
GLU A 417
THR A 503
 CA  A1000 (-2.5A)
CA  A1000 ( 4.8A)
CA  A1000 (-3.1A)
None
 1.47A 4p6sA-3qr1A:
undetectable		 4p6sA-3qr1A:
16.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3va7 KLLA0E08119P

(Kluyveromyces
lactis) 		PF00289
(Biotin_carb_N)
PF00364
(Biotin_lipoyl)
PF02626
(CT_A_B)
PF02682
(CT_C_D)
PF02785
(Biotin_carb_C)
PF02786
(CPSase_L_D2) 		4 ASN A1289
HIS A1287
GLU A1792
THR A1542
 GOL  A1907 (-4.0A)
GOL  A1907 (-4.0A)
None
None
 1.45A 4p6sA-3va7A:
undetectable		 4p6sA-3va7A:
12.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3x3y PHENYLETHYLAMINE
OXIDASE

(Arthrobacter
globiformis) 		PF01179
(Cu_amine_oxid)
PF02728
(Cu_amine_oxidN3) 		4 LEU A  98
HIS A  65
GLU A  97
THR A  92
 None
 1.06A 4p6sA-3x3yA:
undetectable		 4p6sA-3x3yA:
19.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4dwe UNCHARACTERIZED
PROTEIN

(Bacteroides
ovatus) 		PF15421
(Polysacc_deac_3) 		4 ASN A 205
HIS A 457
GLU A 202
THR A  51
 None
None
GOL  A 504 (-3.7A)
None
 1.27A 4p6sA-4dweA:
undetectable		 4p6sA-4dweA:
20.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gxw ADENOSINE DEAMINASE

(Burkholderia
ambifaria) 		PF00962
(A_deaminase) 		4 ASN A 298
LEU A  33
HIS A 296
GLU A  32
 None
 1.44A 4p6sA-4gxwA:
undetectable		 4p6sA-4gxwA:
20.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hu0 CELLULASE

(uncultured
bacterium) 		PF00150
(Cellulase) 		4 ASN A 192
HIS A 146
GLU A 189
THR A 288
 CTT  A 401 (-2.8A)
CTT  A 401 (-3.7A)
None
None
 1.42A 4p6sA-4hu0A:
undetectable		 4p6sA-4hu0A:
20.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4j3b M1 FAMILY
AMINOPEPTIDASE

(Plasmodium
falciparum) 		PF01433
(Peptidase_M1)
PF11940
(DUF3458)
PF17432
(DUF3458_C) 		4 ASN A 527
HIS A 543
GLU A 526
THR A 492
 None
 1.25A 4p6sA-4j3bA:
undetectable		 4p6sA-4j3bA:
13.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4l22 PHOSPHORYLASE

(Streptococcus
mutans) 		PF00343
(Phosphorylase) 		4 ASN A 143
LEU A 552
HIS A 549
GLU A 556
 None
 1.33A 4p6sA-4l22A:
undetectable		 4p6sA-4l22A:
17.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4m1r CELLULASE 5

(soil metagenome) 		PF00150
(Cellulase) 		4 ASN A 131
HIS A  97
GLU A 128
THR A 219
 TRS  A 301 (-3.3A)
TRS  A 301 (-3.9A)
None
None
 1.43A 4p6sA-4m1rA:
undetectable		 4p6sA-4m1rA:
18.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xzw ENDO-GLUCANASE
CHIMERA C10

(Geobacillus sp.
70PC53;
uncultured
bacterium) 		PF00150
(Cellulase) 		4 ASN A 141
HIS A 104
GLU A 138
THR A 229
 None
 1.42A 4p6sA-4xzwA:
undetectable		 4p6sA-4xzwA:
19.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a8q PUTATIVE RETAINING
B-GLYCOSIDASE

(Saccharophagus
degradans) 		PF00150
(Cellulase) 		4 ASN A 188
HIS A 142
GLU A 185
THR A 290
 BGC  A1367 (-3.8A)
BGC  A1367 (-4.0A)
None
None
 1.44A 4p6sA-5a8qA:
undetectable		 4p6sA-5a8qA:
19.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ecu CELLULASE

(Caldicellulosiruptor
saccharolyticus) 		PF00150
(Cellulase)
PF03424
(CBM_17_28) 		4 ASN A 187
HIS A 149
GLU A 184
THR A 284
 CA  A 643 ( 4.8A)
None
None
None
 1.41A 4p6sA-5ecuA:
undetectable		 4p6sA-5ecuA:
17.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5fip GH5 CELLULASE

(unidentified) 		PF00150
(Cellulase)
PF03424
(CBM_17_28) 		4 ASN A 191
HIS A 153
GLU A 188
THR A 293
 None
 1.42A 4p6sA-5fipA:
undetectable		 4p6sA-5fipA:
20.65
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5i3a TYROSINASE

(Bacillus
megaterium) 		PF00264
(Tyrosinase) 		5 ASN A  10
LEU A  12
HIS A  13
GLU A  93
THR A  96
 None
 0.29A 4p6sA-5i3aA:
50.8		 4p6sA-5i3aA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ihs ENDOGLUCANASE,
GLYCOSIDE HYDROLASE
FAMILY 5 PROTEIN

(Cytophaga
hutchinsonii) 		PF00150
(Cellulase) 		4 ASN A 158
HIS A 124
GLU A 155
THR A 246
 None
 1.39A 4p6sA-5ihsA:
undetectable		 4p6sA-5ihsA:
19.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ip9 DNA-DIRECTED RNA
POLYMERASE II
SUBUNIT RPB1

(Saccharomyces
cerevisiae) 		PF00623
(RNA_pol_Rpb1_2)
PF04983
(RNA_pol_Rpb1_3)
PF04990
(RNA_pol_Rpb1_7)
PF04992
(RNA_pol_Rpb1_6)
PF04997
(RNA_pol_Rpb1_1)
PF04998
(RNA_pol_Rpb1_5)
PF05000
(RNA_pol_Rpb1_4) 		4 ASN A  54
LEU A  53
GLU A 259
THR A 263
 None
 1.29A 4p6sA-5ip9A:
undetectable		 4p6sA-5ip9A:
10.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mc5 XAA-PRO DIPEPTIDASE

(Homo sapiens) 		no annotation 4 ASN A  26
LEU A  25
GLU A 191
THR A 188
 None
 1.23A 4p6sA-5mc5A:
undetectable		 4p6sA-5mc5A:
13.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mps PRE-MRNA-PROCESSING
FACTOR 17

(Saccharomyces
cerevisiae) 		PF00249
(Myb_DNA-binding) 		4 LEU o 177
HIS o 176
GLU o 236
THR o 235
 None
 1.19A 4p6sA-5mpso:
undetectable		 4p6sA-5mpso:
21.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n6v AMYLOSUCRASE

(Neisseria
polysaccharea) 		no annotation 4 ASN A 367
LEU A 368
GLU A 365
THR A 363
 None
None
None
GLC  A 704 ( 4.7A)
 1.43A 4p6sA-5n6vA:
undetectable		 4p6sA-5n6vA:
18.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wh8 PUTATIVE
CARBOHYDRATE-ACTIVE
ENZYME

(uncultured
organism) 		no annotation 4 ASN A 195
HIS A 156
GLU A 192
THR A 283
 None
 1.41A 4p6sA-5wh8A:
undetectable		 4p6sA-5wh8A:
11.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5x0y TRANSCRIPTION
REGULATORY PROTEIN
SNF2

(Saccharomyces
cerevisiae) 		PF00176
(SNF2_N)
PF00271
(Helicase_C)
PF14619
(SnAC) 		4 ASN O1060
HIS O1061
GLU O1218
THR O1213
 None
 1.29A 4p6sA-5x0yO:
undetectable		 4p6sA-5x0yO:
16.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cza

() 		no annotation 4 LEU B  83
HIS B  75
GLU A  43
THR B 151
 None
 1.45A 4p6sA-6czaB:
undetectable		 4p6sA-6czaB:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fos PHOTOSYSTEM I P700
CHLOROPHYLL A
APOPROTEIN A1

(Cyanidioschyzon
merolae) 		no annotation 4 ASN A 455
LEU A 451
HIS A 454
THR A 471
 None
CLA  A1132 (-4.5A)
CLA  A1132 (-3.6A)
None
 1.42A 4p6sA-6fosA:
undetectable		 4p6sA-6fosA:
15.00