SIMILAR PATTERNS OF AMINO ACIDS FOR 4OMW_D_TE4D202

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1exs BETA-LACTOGLOBULIN

(Sus scrofa) 		PF00061
(Lipocalin) 		5 LEU A  32
GLU A  89
ASN A 109
ALA A 111
SER A 116
 None
 1.05A 4omwD-1exsA:
18.0		 4omwD-1exsA:
63.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qhg ATP-DEPENDENT
HELICASE PCRA

(Geobacillus
stearothermophilus) 		PF00580
(UvrD-helicase)
PF13361
(UvrD_C) 		5 LEU A 497
GLU A 391
ASN A 511
ALA A 362
GLU A 510
 None
 1.30A 4omwD-1qhgA:
undetectable		 4omwD-1qhgA:
12.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qhh PROTEIN (PCRA
(SUBUNIT))

(Geobacillus
stearothermophilus) 		PF00580
(UvrD-helicase)
PF13361
(UvrD_C)
no annotation 		5 LEU C 497
GLU B 391
ASN C 511
ALA B 362
GLU C 510
 None
 1.31A 4omwD-1qhhC:
undetectable		 4omwD-1qhhC:
25.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1smk MALATE
DEHYDROGENASE,
GLYOXYSOMAL

(Citrullus
lanatus) 		PF00056
(Ldh_1_N)
PF02866
(Ldh_1_C) 		5 LEU A 305
PRO A 306
ASN A 165
ALA A 221
GLU A 342
 None
 1.46A 4omwD-1smkA:
0.0		 4omwD-1smkA:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xpp DNA-DIRECTED RNA
POLYMERASE SUBUNIT L

(Thermoplasma
acidophilum) 		PF13656
(RNA_pol_L_2) 		5 LEU A  11
ASN A  60
ASN A  27
ALA A   7
GLU A   8
 None
 1.50A 4omwD-1xppA:
undetectable		 4omwD-1xppA:
23.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2dws COPPER-CONTAINING
NITRITE REDUCTASE

(Rhodobacter
sphaeroides) 		PF00394
(Cu-oxidase)
PF07732
(Cu-oxidase_3) 		5 ASN A 339
ASN A 337
ALA A 348
GLN A 279
SER A 284
 None
 1.45A 4omwD-2dwsA:
0.0		 4omwD-2dwsA:
20.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2grv LPQW

(Mycolicibacterium
smegmatis) 		PF00496
(SBP_bac_5) 		5 LEU A  45
ASN A  41
ASN A  52
ALA A  53
GLN A 448
 None
 1.35A 4omwD-2grvA:
0.0		 4omwD-2grvA:
14.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2mii PENICILLIN-BINDING
PROTEIN ACTIVATOR
LPOB

(Escherichia
coli) 		PF13036
(LpoB) 		5 LEU A 174
PRO A 172
ASN A  94
ASN A  93
SER A 164
 None
 1.30A 4omwD-2miiA:
0.0		 4omwD-2miiA:
20.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2naf PEPTIDYL-TRNA
HYDROLASE

(Mycolicibacterium
smegmatis) 		PF01195
(Pept_tRNA_hydro) 		5 LEU A  55
ALA A   2
GLU A   3
GLN A  88
SER A  59
 None
 1.41A 4omwD-2nafA:
0.0		 4omwD-2nafA:
21.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ctt MALTASE-GLUCOAMYLASE

(Homo sapiens) 		PF00088
(Trefoil)
PF01055
(Glyco_hydro_31)
PF16863
(NtCtMGAM_N) 		5 PRO A 367
GLU A 446
ASN A 201
ALA A 216
SER A 527
 None
 1.48A 4omwD-3cttA:
undetectable		 4omwD-3cttA:
11.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fr8 PUTATIVE KETOL-ACID
REDUCTOISOMERASE
(OS05G0573700
PROTEIN)

(Oryza sativa) 		PF01450
(IlvC)
PF07991
(IlvN) 		5 LEU A 479
ASN A 491
GLU A 492
GLN A 310
SER A 314
 None
None
MG  A   1 (-3.3A)
None
None
 1.27A 4omwD-3fr8A:
undetectable		 4omwD-3fr8A:
15.40
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3kza BETA-LACTOGLOBULIN

(Bos taurus;
Equus caballus) 		PF00061
(Lipocalin) 		6 LEU A  31
PRO A  38
GLU A  89
ASN A 109
ALA A 111
SER A 116
 None
 0.49A 4omwD-3kzaA:
28.9		 4omwD-3kzaA:
78.40
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3kza BETA-LACTOGLOBULIN

(Bos taurus;
Equus caballus) 		PF00061
(Lipocalin) 		6 LEU A  31
PRO A  38
GLU A  89
ASN A 109
GLN A 115
SER A 116
 None
 0.76A 4omwD-3kzaA:
28.9		 4omwD-3kzaA:
78.40
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3kza BETA-LACTOGLOBULIN

(Bos taurus;
Equus caballus) 		PF00061
(Lipocalin) 		5 LEU A  39
PRO A  38
ASN A 109
ALA A 111
SER A 116
 None
 1.48A 4omwD-3kzaA:
28.9		 4omwD-3kzaA:
78.40
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ph5 BETA-LACTOGLOBULIN

(Bos taurus) 		PF00061
(Lipocalin) 		7 LEU A  47
PRO A  54
ASN A 104
GLU A 105
ASN A 125
ALA A 127
SER A 132
 None
 0.30A 4omwD-3ph5A:
33.0		 4omwD-3ph5A:
96.30
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ph5 BETA-LACTOGLOBULIN

(Bos taurus) 		PF00061
(Lipocalin) 		6 LEU A  55
PRO A  54
ASN A 104
ASN A 125
ALA A 127
SER A 132
 None
 1.38A 4omwD-3ph5A:
33.0		 4omwD-3ph5A:
96.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zyj LEUCINE-RICH
REPEAT-CONTAINING
PROTEIN 4C

(Homo sapiens) 		PF00560
(LRR_1)
PF07679
(I-set)
PF13306
(LRR_5)
PF13855
(LRR_8) 		5 ASN A 208
ASN A 229
ALA A 205
GLN A 252
SER A 253
 None
 1.38A 4omwD-3zyjA:
undetectable		 4omwD-3zyjA:
16.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4h1s 5'-NUCLEOTIDASE

(Homo sapiens) 		PF00149
(Metallophos)
PF02872
(5_nucleotid_C) 		5 LEU A 191
PRO A 187
ASN A 143
ALA A 199
GLU A 194
 None
 1.39A 4omwD-4h1sA:
undetectable		 4omwD-4h1sA:
15.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5m22 HYDROQUINONE
DIOXYGENASE LARGE
SUBUNIT

(Sphingomonas
sp. TTNP3) 		no annotation 5 LEU B 132
PRO B 142
ASN B 160
ASN B 159
SER B 133
 None
 1.33A 4omwD-5m22B:
undetectable		 4omwD-5m22B:
17.93