SIMILAR PATTERNS OF AMINO ACIDS FOR 4ODO_A_FK5A205_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lgq CELL CYCLE
CHECKPOINT PROTEIN
CHFR

(Homo sapiens) 		PF00498
(FHA) 		4 THR A  73
ARG A  62
GLU A  75
VAL A  64
 None
 0.74A 4odoC-1lgqA:
0.0		 4odoC-1lgqA:
23.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mty METHANE
MONOOXYGENASE
HYDROXYLASE

(Methylococcus
capsulatus) 		PF02332
(Phenol_Hydrox) 		4 THR B  53
ARG B  99
GLU B  50
VAL B 174
 None
 1.47A 4odoC-1mtyB:
undetectable		 4odoC-1mtyB:
17.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1uqw PUTATIVE BINDING
PROTEIN YLIB

(Escherichia
coli) 		PF00496
(SBP_bac_5) 		4 THR A 205
ARG A 198
GLU A 214
VAL A 200
 None
ZN  A 505 ( 4.2A)
ZN  A 505 (-2.2A)
None
 1.23A 4odoC-1uqwA:
0.0		 4odoC-1uqwA:
15.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1vbk HYPOTHETICAL PROTEIN
PH1313

(Pyrococcus
horikoshii) 		PF02568
(ThiI)
PF02926
(THUMP) 		4 THR A  36
ARG A  31
GLU A  32
VAL A  35
 None
 1.38A 4odoC-1vbkA:
0.0		 4odoC-1vbkA:
20.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2b5o FERREDOXIN--NADP
REDUCTASE

(Synechococcus
sp. PCC 7002) 		PF00175
(NAD_binding_1) 		4 THR A 327
ARG A 338
GLU A 341
VAL A 333
 None
 1.38A 4odoC-2b5oA:
0.0		 4odoC-2b5oA:
16.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bmf RNA HELICASE

(Dengue virus) 		PF07652
(Flavi_DEAD) 		4 THR A 450
ARG A 457
GLU A 412
VAL A 449
 None
 1.28A 4odoC-2bmfA:
0.0		 4odoC-2bmfA:
17.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2iyk REGULATOR OF
NONSENSE TRANSCRIPTS
1

(Homo sapiens) 		PF09416
(UPF1_Zn_bind) 		4 THR A  59
ARG A  79
GLU A  57
VAL A  70
 None
 1.29A 4odoC-2iykA:
undetectable		 4odoC-2iykA:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jls SERINE PROTEASE
SUBUNIT NS3

(Dengue virus) 		PF07652
(Flavi_DEAD) 		4 THR A 450
ARG A 457
GLU A 412
VAL A 449
 GOL  A1624 ( 4.4A)
None
None
None
 1.08A 4odoC-2jlsA:
0.0		 4odoC-2jlsA:
17.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2uuu ALKYLDIHYDROXYACETON
EPHOSPHATE SYNTHASE

(Dictyostelium
discoideum) 		PF01565
(FAD_binding_4)
PF02913
(FAD-oxidase_C) 		4 THR A 189
ARG A 187
GLU A 186
VAL A 166
 None
 1.31A 4odoC-2uuuA:
0.0		 4odoC-2uuuA:
15.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2v9k UNCHARACTERIZED
PROTEIN FLJ32312

(Homo sapiens) 		no annotation 4 THR A 444
ARG A 447
GLU A 488
VAL A 448
 None
CL  A1529 (-3.8A)
CL  A1529 ( 4.9A)
None
 1.36A 4odoC-2v9kA:
0.0		 4odoC-2v9kA:
14.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2whx SERINE
PROTEASE/NTPASE/HELI
CASE NS3

(Dengue virus) 		PF00949
(Peptidase_S7)
PF07652
(Flavi_DEAD) 		4 THR A 450
ARG A 457
GLU A 412
VAL A 449
 None
 1.09A 4odoC-2whxA:
undetectable		 4odoC-2whxA:
14.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xij METHYLMALONYL-COA
MUTASE,
MITOCHONDRIAL

(Homo sapiens) 		PF01642
(MM_CoA_mutase)
PF02310
(B12-binding) 		4 THR A 202
ARG A 559
GLU A 168
VAL A 201
 None
 1.39A 4odoC-2xijA:
undetectable		 4odoC-2xijA:
13.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zoo PROBABLE NITRITE
REDUCTASE

(Pseudoalteromonas
haloplanktis) 		PF00034
(Cytochrom_C)
PF00394
(Cu-oxidase)
PF07732
(Cu-oxidase_3) 		4 THR A 213
ARG A 215
GLU A 265
VAL A 153
 None
 0.94A 4odoC-2zooA:
undetectable		 4odoC-2zooA:
17.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ejf NON-STRUCTURAL
PROTEIN 3

(Avian
coronavirus) 		PF01661
(Macro) 		4 THR A 151
ARG A 153
GLU A  11
VAL A 120
 None
 1.23A 4odoC-3ejfA:
undetectable		 4odoC-3ejfA:
21.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3eo2 NEUROEPITHELIAL
CELL-TRANSFORMING
GENE 1 PROTEIN

(Homo sapiens) 		PF00621
(RhoGEF) 		4 THR A 245
ARG A 175
GLU A 172
VAL A 246
 None
 1.47A 4odoC-3eo2A:
undetectable		 4odoC-3eo2A:
18.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3g2p PCZA361.24

(Amycolatopsis
orientalis) 		PF13649
(Methyltransf_25) 		4 THR A 227
ARG A 229
GLU A 210
VAL A  10
 None
 1.00A 4odoC-3g2pA:
undetectable		 4odoC-3g2pA:
18.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gcf TERMINAL OXYGENASE
COMPONENT OF
CARBAZOLE
1,9A-DIOXYGENASE

(Nocardioides
aromaticivorans) 		PF00355
(Rieske)
PF11723
(Aromatic_hydrox) 		4 THR A  53
ARG A 170
GLU A 299
VAL A  52
 None
None
CL  A 396 ( 4.0A)
CL  A 396 ( 4.6A)
 1.30A 4odoC-3gcfA:
undetectable		 4odoC-3gcfA:
20.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h6t GLUTAMATE RECEPTOR 2

(Rattus
norvegicus) 		PF10613
(Lig_chan-Glu_bd) 		4 THR A  93
ARG A 149
GLU A 145
VAL A  95
 None
 1.40A 4odoC-3h6tA:
undetectable		 4odoC-3h6tA:
18.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ol2 PLEXIN-B1

(Homo sapiens) 		PF01403
(Sema)
PF01437
(PSI) 		4 THR B  70
ARG B 122
GLU B 120
VAL B  68
 None
 1.44A 4odoC-3ol2B:
0.5		 4odoC-3ol2B:
15.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fer EXPANSIN-YOAJ

(Bacillus
subtilis) 		PF03330
(DPBB_1) 		4 THR A 175
ARG A 173
GLU A 142
VAL A 181
 None
 1.03A 4odoC-4ferA:
undetectable		 4odoC-4ferA:
19.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4kmr TRANSCRIPTIONAL
REGULATOR, LACI
FAMILY

(Sanguibacter
keddieii) 		PF13377
(Peripla_BP_3) 		4 THR A 298
ARG A 336
GLU A 300
VAL A 338
 None
 1.04A 4odoC-4kmrA:
undetectable		 4odoC-4kmrA:
22.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4w8y CRISPR SYSTEM CMR
SUBUNIT CMR2

(Pyrococcus
furiosus) 		PF12469
(DUF3692) 		4 THR A 220
ARG A 413
GLU A 377
VAL A 373
 None
 1.38A 4odoC-4w8yA:
undetectable		 4odoC-4w8yA:
10.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xh9 NEUROEPITHELIAL
CELL-TRANSFORMING
GENE 1 PROTEIN

(Homo sapiens) 		PF00169
(PH)
PF00621
(RhoGEF) 		4 THR A 245
ARG A 175
GLU A 172
VAL A 246
 None
 1.42A 4odoC-4xh9A:
undetectable		 4odoC-4xh9A:
19.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4z37 PUTATIVE MIXED
POLYKETIDE
SYNTHASE/NON-RIBOSOM
AL PEPTIDE
SYNTHETASE

(Brevibacillus
brevis) 		PF00109
(ketoacyl-synt)
PF02801
(Ketoacyl-synt_C)
PF16197
(KAsynt_C_assoc) 		4 THR A2624
ARG A2586
GLU A2757
VAL A2620
 None
 1.37A 4odoC-4z37A:
0.3		 4odoC-4z37A:
13.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ah0 LIPASE

(Pelosinus
fermentans) 		no annotation 4 THR A 234
ARG A 236
GLU A 228
VAL A 237
 None
 1.36A 4odoC-5ah0A:
undetectable		 4odoC-5ah0A:
15.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5b4w PLEXIN-B1

(Homo sapiens) 		PF01403
(Sema)
PF01437
(PSI) 		4 THR A  70
ARG A 122
GLU A 120
VAL A  68
 None
 1.43A 4odoC-5b4wA:
undetectable		 4odoC-5b4wA:
14.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5cww NUCLEOPORIN NUP159
NUCLEOPORIN NUP82

(Chaetomium
thermophilum) 		no annotation 4 THR B 475
ARG C1467
GLU B 386
VAL C1465
 None
 0.96A 4odoC-5cwwB:
undetectable		 4odoC-5cwwB:
12.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ehk LANTIBIOTIC
DEHYDRATASE

(Microbispora
corallina) 		PF04738
(Lant_dehydr_N)
PF14028
(Lant_dehydr_C) 		4 THR A 385
ARG A 685
GLU A 386
VAL A 382
 None
 1.41A 4odoC-5ehkA:
undetectable		 4odoC-5ehkA:
9.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5guh PIWI

(Bombyx mori) 		PF02170
(PAZ)
PF02171
(Piwi) 		4 THR A 537
ARG A 542
GLU A 546
VAL A 570
 None
 1.45A 4odoC-5guhA:
0.8		 4odoC-5guhA:
10.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ihx TYROSINE--TRNA
LIGASE,
MITOCHONDRIAL

(Aspergillus
nidulans) 		PF00579
(tRNA-synt_1b) 		4 THR A 318
ARG A 241
GLU A 238
VAL A 319
 None
 1.48A 4odoC-5ihxA:
undetectable		 4odoC-5ihxA:
18.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lw3 POLY(BETA-D-MANNURON
ATE) C5 EPIMERASE 6

(Azotobacter
vinelandii) 		no annotation 4 THR A 184
ARG A 163
GLU A 186
VAL A 161
 None
 0.94A 4odoC-5lw3A:
undetectable		 4odoC-5lw3A:
18.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5m22 HYDROQUINONE
DIOXYGENASE LARGE
SUBUNIT
HYDROQUINONE
DIOXYGENASE SMALL
SUBUNIT

(Sphingomonas
sp. TTNP3) 		no annotation 4 THR B 290
ARG B 288
GLU A  20
VAL B 274
 None
 1.07A 4odoC-5m22B:
undetectable		 4odoC-5m22B:
18.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n94 CG9323, ISOFORM A

(Drosophila
melanogaster) 		no annotation 4 THR A 530
ARG A 537
GLU A 493
VAL A 529
 None
 1.21A 4odoC-5n94A:
undetectable		 4odoC-5n94A:
19.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5u8z CAROTENOID OXYGENASE
1

(Neurospora
crassa) 		PF03055
(RPE65) 		4 THR A 204
ARG A 394
GLU A 254
VAL A 203
 None
 1.20A 4odoC-5u8zA:
undetectable		 4odoC-5u8zA:
14.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wmm NRPS

(Micromonospora
sp. ML1) 		no annotation 4 THR A 812
ARG A 766
GLU A 822
VAL A 837
 None
 1.40A 4odoC-5wmmA:
0.0		 4odoC-5wmmA:
18.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5y6n HELICASE DOMAIN FROM
GENOME POLYPROTEIN

(Zika virus) 		no annotation 4 THR A 449
ARG A 456
GLU A 413
VAL A 448
 None
 1.08A 4odoC-5y6nA:
undetectable		 4odoC-5y6nA:
21.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6deg BETA SLIDING CLAMP

(Bartonella
birtlesii) 		no annotation 4 THR A   4
ARG A   2
GLU A  62
VAL A  88
 None
 1.04A 4odoC-6degA:
undetectable		 4odoC-6degA:
18.79