SIMILAR PATTERNS OF AMINO ACIDS FOR 4KMU_H_RFPH1401

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fkm PROTEIN (GYP1P)

(Saccharomyces
cerevisiae) 		PF00566
(RabGAP-TBC) 		5 GLN A 270
ASP A 259
SER A 277
LEU A 293
ILE A 281
 None
 1.21A 4kmuH-1fkmA:
0.6		 4kmuH-1fkmA:
14.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1pss PHOTOSYNTHETIC
REACTION CENTER

(Rhodobacter
sphaeroides) 		PF00124
(Photo_RC) 		5 HIS L 230
ARG L 217
ASN M  44
ILE L 224
ARG L 231
 FE  M 302 (-3.4A)
None
None
U10  L 272 (-4.4A)
None
 1.40A 4kmuH-1pssL:
0.8		 4kmuH-1pssL:
10.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2h01 2-CYS PEROXIREDOXIN

(Plasmodium
yoelii) 		PF00578
(AhpC-TSA)
PF10417
(1-cysPrx_C) 		5 ASP A  71
HIS A  76
LEU A  51
PRO A  45
ILE A  48
 None
 1.27A 4kmuH-2h01A:
0.0		 4kmuH-2h01A:
11.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2hcf HYDROLASE, HALOACID
DEHALOGENASE-LIKE
FAMILY

(Chlorobaculum
tepidum) 		PF13419
(HAD_2) 		5 ASP A 102
LEU A 114
ARG A 124
PRO A 130
ARG A  98
 None
 1.37A 4kmuH-2hcfA:
1.1		 4kmuH-2hcfA:
11.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2jsc TRANSCRIPTIONAL
REGULATOR
RV1994C/MT2050

(Mycobacterium
tuberculosis) 		PF01022
(HTH_5) 		5 GLN A  39
ASP A  32
HIS A  43
LEU A  55
ILE A  26
 None
 1.05A 4kmuH-2jscA:
0.0		 4kmuH-2jscA:
7.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qf7 PYRUVATE CARBOXYLASE
PROTEIN

(Rhizobium etli) 		PF00289
(Biotin_carb_N)
PF00364
(Biotin_lipoyl)
PF00682
(HMGL-like)
PF02436
(PYC_OADA)
PF02785
(Biotin_carb_C)
PF02786
(CPSase_L_D2) 		5 GLN A 783
ASP A 719
HIS A 747
SER A 553
LEU A 554
 ZN  A1157 ( 4.5A)
None
ZN  A1157 (-3.3A)
None
None
 1.38A 4kmuH-2qf7A:
5.6		 4kmuH-2qf7A:
23.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2y7c TYPE I RESTRICTION
ENZYME ECOKI M
PROTEIN

(Escherichia
coli) 		PF02384
(N6_Mtase)
PF12161
(HsdM_N) 		5 ASP B 239
ARG B 245
LEU B 182
PRO B 258
ILE B 213
 None
 1.30A 4kmuH-2y7cB:
0.0		 4kmuH-2y7cB:
17.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ayx MEMBRANE-BOUND
HYDROGENASE LARGE
SUBUNIT

(Hydrogenovibrio
marinus) 		PF00374
(NiFeSe_Hases) 		5 SER A 594
LEU A 591
PRO A 552
ILE A 398
ARG A 402
 None
 1.47A 4kmuH-3ayxA:
0.0		 4kmuH-3ayxA:
17.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bg9 PYRUVATE
CARBOXYLASE,
MITOCHONDRIAL

(Homo sapiens) 		PF00682
(HMGL-like)
PF02436
(PYC_OADA) 		5 GLN A 807
ASP A 742
HIS A 771
SER A 576
LEU A 577
 None
None
MN  A2001 (-3.4A)
None
None
 1.35A 4kmuH-3bg9A:
0.0		 4kmuH-3bg9A:
20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3cux MALATE SYNTHASE

(Bacillus
anthracis) 		PF01274
(Malate_synthase) 		5 GLN A 230
ASP A 264
HIS A 265
LEU A 200
PRO A  81
 None
 1.33A 4kmuH-3cuxA:
0.0		 4kmuH-3cuxA:
17.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3faw RETICULOCYTE BINDING
PROTEIN

(Streptococcus
agalactiae) 		PF00128
(Alpha-amylase)
PF02922
(CBM_48) 		5 GLN A 472
GLN A 465
HIS A 451
LEU A 393
ASN A 446
 None
 1.44A 4kmuH-3fawA:
undetectable		 4kmuH-3fawA:
21.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k2g RESINIFERATOXIN-BIND
ING,
PHOSPHOTRIESTERASE-R
ELATED PROTEIN

(Rhodobacter
sphaeroides) 		PF02126
(PTE) 		5 ASP A 167
ARG A 169
SER A   5
LEU A 202
PRO A  20
 None
 1.48A 4kmuH-3k2gA:
0.0		 4kmuH-3k2gA:
14.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lqb LOC792177 PROTEIN

(Danio rerio) 		PF01400
(Astacin) 		5 GLN A  48
ARG A 192
SER A 186
PRO A 146
ILE A 188
 EDO  A 203 (-3.1A)
None
None
None
None
 1.43A 4kmuH-3lqbA:
undetectable		 4kmuH-3lqbA:
9.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3o63 PROBABLE
THIAMINE-PHOSPHATE
PYROPHOSPHORYLASE

(Mycobacterium
tuberculosis) 		PF02581
(TMP-TENI) 		5 ASP A  16
LEU A 214
PRO A 207
ILE A 201
ARG A  18
 None
 1.39A 4kmuH-3o63A:
undetectable		 4kmuH-3o63A:
10.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rgw MEMBRANE-BOUND
HYDROGENASE (NIFE)
LARGE SUBUNIT HOXG

(Cupriavidus
necator) 		PF00374
(NiFeSe_Hases) 		5 SER L 601
LEU L 598
PRO L 559
ILE L 399
ARG L 403
 None
 1.46A 4kmuH-3rgwL:
undetectable		 4kmuH-3rgwL:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ivn TRANSCRIPTIONAL
REGULATOR

(Vibrio
vulnificus) 		PF01380
(SIS)
PF01418
(HTH_6) 		5 ASP A  27
ARG A  10
PRO A  17
ASN A  14
ARG A  23
 None
 1.45A 4kmuH-4ivnA:
undetectable		 4kmuH-4ivnA:
12.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jx6 PYRUVATE CARBOXYLASE

(Rhizobium etli) 		PF00682
(HMGL-like)
PF02436
(PYC_OADA) 		5 GLN A 783
ASP A 719
HIS A 747
SER A 553
LEU A 554
 ZN  A1102 ( 4.7A)
None
KCX  A 718 (-3.2A)
None
None
 1.37A 4kmuH-4jx6A:
undetectable		 4kmuH-4jx6A:
18.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4kqk NICOTINATE-NUCLEOTID
E--DIMETHYLBENZIMIDA
ZOLE
PHOSPHORIBOSYLTRANSF
ERASE

(Salmonella
enterica) 		PF02277
(DBI_PRT) 		5 GLN A  45
ASP A 263
LEU A  42
ARG A  38
ILE A 327
 None
None
None
SO4  A 401 (-3.9A)
EDO  A 406 (-4.8A)
 1.34A 4kmuH-4kqkA:
undetectable		 4kmuH-4kqkA:
13.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pw1 UNCHARACTERIZED
PROTEIN

([Clostridium]
leptum) 		no annotation 5 GLN A 166
ASP A 168
LEU A  50
PRO A 273
ILE A 255
 None
 1.37A 4kmuH-4pw1A:
undetectable		 4kmuH-4pw1A:
10.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pw1 UNCHARACTERIZED
PROTEIN

([Clostridium]
leptum) 		no annotation 5 GLN A 166
ASP A 168
SER A 248
LEU A  50
ILE A 255
 None
 1.08A 4kmuH-4pw1A:
undetectable		 4kmuH-4pw1A:
10.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qiw DNA-DIRECTED RNA
POLYMERASE

(Thermococcus
kodakarensis) 		PF00562
(RNA_pol_Rpb2_6)
PF04560
(RNA_pol_Rpb2_7)
PF04561
(RNA_pol_Rpb2_2)
PF04563
(RNA_pol_Rpb2_1)
PF04565
(RNA_pol_Rpb2_3)
PF04566
(RNA_pol_Rpb2_4)
PF04567
(RNA_pol_Rpb2_5) 		5 ASP B 428
HIS B 438
ARG B 441
PRO B 472
ASN B 476
 None
 0.83A 4kmuH-4qiwB:
28.5		 4kmuH-4qiwB:
27.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qsl PYRUVATE CARBOXYLASE

(Listeria
monocytogenes) 		no annotation 5 GLN H 775
ASP H 711
HIS H 739
SER H 545
LEU H 546
 None
 1.43A 4kmuH-4qslH:
undetectable		 4kmuH-4qslH:
22.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4twb RIBOSE-PHOSPHATE
PYROPHOSPHOKINASE

(Sulfolobus
solfataricus) 		PF00156
(Pribosyltran)
PF13793
(Pribosyltran_N) 		5 GLN A  60
ASP A  95
SER A 220
LEU A 248
ILE A 218
 None
None
SO4  A 302 (-4.0A)
None
None
 1.27A 4kmuH-4twbA:
undetectable		 4kmuH-4twbA:
11.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a8r METHYL-COENZYME M
REDUCTASE II,
SUBUNIT BETA

(Methanothermobacter
marburgensis) 		PF02240
(MCR_gamma) 		5 ASP C 192
SER C 137
LEU C 140
ARG C 104
ILE C  88
 None
 1.45A 4kmuH-5a8rC:
undetectable		 4kmuH-5a8rC:
12.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bvi INTERFERON
REGULATORY FACTOR 4

(Mus musculus) 		PF10401
(IRF-3) 		5 ASP A 353
ARG A 328
LEU A 385
ILE A 334
ARG A 352
 None
 1.34A 4kmuH-5bviA:
undetectable		 4kmuH-5bviA:
9.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gz4 SNAKE VENOM
PHOSPHODIESTERASE
(PDE)

(Naja atra) 		PF01033
(Somatomedin_B)
PF01223
(Endonuclease_NS)
PF01663
(Phosphodiest) 		5 ASP A 739
SER A 610
LEU A 617
PRO A 751
ILE A 613
 None
 1.38A 4kmuH-5gz4A:
0.9		 4kmuH-5gz4A:
20.20
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5tw1 DNA-DIRECTED RNA
POLYMERASE SUBUNIT
BETA

(Mycolicibacterium
smegmatis) 		PF00562
(RNA_pol_Rpb2_6)
PF04560
(RNA_pol_Rpb2_7)
PF04561
(RNA_pol_Rpb2_2)
PF04563
(RNA_pol_Rpb2_1)
PF04565
(RNA_pol_Rpb2_3)
PF10385
(RNA_pol_Rpb2_45) 		7 ARG C 445
SER C 447
LEU C 449
ARG C 456
PRO C 480
ASN C 484
ILE C 488
 None
 1.24A 4kmuH-5tw1C:
35.0		 4kmuH-5tw1C:
45.93
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5tw1 DNA-DIRECTED RNA
POLYMERASE SUBUNIT
BETA

(Mycolicibacterium
smegmatis) 		PF00562
(RNA_pol_Rpb2_6)
PF04560
(RNA_pol_Rpb2_7)
PF04561
(RNA_pol_Rpb2_2)
PF04563
(RNA_pol_Rpb2_1)
PF04565
(RNA_pol_Rpb2_3)
PF10385
(RNA_pol_Rpb2_45) 		8 ASP C 432
HIS C 442
SER C 447
LEU C 449
ARG C 456
PRO C 480
ASN C 484
ILE C 488
 None
 0.98A 4kmuH-5tw1C:
35.0		 4kmuH-5tw1C:
45.93
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5tw1 DNA-DIRECTED RNA
POLYMERASE SUBUNIT
BETA

(Mycolicibacterium
smegmatis) 		PF00562
(RNA_pol_Rpb2_6)
PF04560
(RNA_pol_Rpb2_7)
PF04561
(RNA_pol_Rpb2_2)
PF04563
(RNA_pol_Rpb2_1)
PF04565
(RNA_pol_Rpb2_3)
PF10385
(RNA_pol_Rpb2_45) 		9 GLN C 426
GLN C 429
ASP C 432
HIS C 442
SER C 447
PRO C 480
ASN C 484
ILE C 488
ARG C 604
 None
 1.35A 4kmuH-5tw1C:
35.0		 4kmuH-5tw1C:
45.93
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5tw1 DNA-DIRECTED RNA
POLYMERASE SUBUNIT
BETA

(Mycolicibacterium
smegmatis) 		PF00562
(RNA_pol_Rpb2_6)
PF04560
(RNA_pol_Rpb2_7)
PF04561
(RNA_pol_Rpb2_2)
PF04563
(RNA_pol_Rpb2_1)
PF04565
(RNA_pol_Rpb2_3)
PF10385
(RNA_pol_Rpb2_45) 		9 GLN C 429
ASP C 432
HIS C 442
SER C 447
LEU C 449
PRO C 480
ASN C 484
ILE C 488
ARG C 604
 None
 1.32A 4kmuH-5tw1C:
35.0		 4kmuH-5tw1C:
45.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vyw PYRUVATE CARBOXYLASE

(Lactococcus
lactis) 		PF00289
(Biotin_carb_N)
PF00682
(HMGL-like)
PF02436
(PYC_OADA)
PF02785
(Biotin_carb_C)
PF02786
(CPSase_L_D2) 		5 GLN A 768
ASP A 704
HIS A 732
SER A 538
LEU A 539
 None
None
MN  A1201 (-4.0A)
None
None
 1.41A 4kmuH-5vywA:
undetectable		 4kmuH-5vywA:
22.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5w5z 3C10 FAB LIGHT CHAIN

(Rattus
norvegicus) 		no annotation 5 GLN L   6
HIS L  91
LEU L  73
PRO L  55
ILE L  48
 None
 1.49A 4kmuH-5w5zL:
undetectable		 4kmuH-5w5zL:
4.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5x6o SERINE/THREONINE-PRO
TEIN KINASE MEC1

(Saccharomyces
cerevisiae) 		no annotation 5 ASP C1566
SER C1597
LEU C1627
ILE C1601
ARG C1567
 None
 1.13A 4kmuH-5x6oC:
undetectable		 4kmuH-5x6oC:
4.75