SIMILAR PATTERNS OF AMINO ACIDS FOR 4J4V_B_SVRB301_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kqg FORMATE
DEHYDROGENASE,
NITRATE-INDUCIBLE,
IRON-SULFUR SUBUNIT

(Escherichia
coli) 		PF09163
(Form-deh_trans)
PF12800
(Fer4_4)
PF13247
(Fer4_11) 		5 GLY B 221
ASN B 215
ALA B 196
MET B 101
PHE B 145
 None
None
None
None
SF4  B 807 (-4.7A)
 1.22A 4j4vB-1kqgB:
undetectable		 4j4vB-1kqgB:
21.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lpf DIHYDROLIPOAMIDE
DEHYDROGENASE

(Pseudomonas
fluorescens) 		PF02852
(Pyr_redox_dim)
PF07992
(Pyr_redox_2) 		5 GLY A 192
ARG A 201
ALA A 200
VAL A 208
PHE A 215
 None
 1.34A 4j4vB-1lpfA:
0.7		 4j4vB-1lpfA:
20.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xl3 SECRETION CONTROL
PROTEIN

(Yersinia pestis) 		PF07201
(HrpJ) 		5 GLY A 177
ALA A 167
VAL A 175
GLN A  86
PRO A 182
 None
 1.42A 4j4vB-1xl3A:
undetectable		 4j4vB-1xl3A:
21.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wk2 CHITINASE A

(Serratia
marcescens) 		PF00704
(Glyco_hydro_18)
PF08329
(ChitinaseA_N) 		5 GLY A 470
ARG A 172
ALA A 543
VAL A 477
PRO A 467
 None
SN5  A1563 ( 4.2A)
None
None
None
 1.41A 4j4vB-2wk2A:
0.0		 4j4vB-2wk2A:
17.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2z1b DELTA-AMINOLEVULINIC
ACID DEHYDRATASE

(Mus musculus) 		PF00490
(ALAD) 		5 ARG A 240
ALA A 239
VAL A 264
MET A 260
PHE A 200
 None
 1.49A 4j4vB-2z1bA:
undetectable		 4j4vB-2z1bA:
22.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bzm MENAQUINONE-SPECIFIC
ISOCHORISMATE
SYNTHASE

(Escherichia
coli) 		PF00425
(Chorismate_bind) 		5 GLY A 347
ALA A 179
VAL A 192
PRO A 341
PHE A 100
 None
 1.46A 4j4vB-3bzmA:
0.0		 4j4vB-3bzmA:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hbu SECRETED PROTEASE C

(Dickeya
chrysanthemi) 		PF00353
(HemolysinCabind)
PF00413
(Peptidase_M10)
PF08548
(Peptidase_M10_C) 		5 GLY P 330
ASN P 331
VAL P 325
GLN P 313
PHE P  30
 None
 1.50A 4j4vB-3hbuP:
undetectable		 4j4vB-3hbuP:
19.49
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ouo NUCLEOPROTEIN

(Rift Valley
fever
phlebovirus) 		PF05733
(Tenui_N) 		5 GLY A  65
ASN A  66
LYS A  67
PRO A 127
PHE A 176
 None
 0.74A 4j4vB-3ouoA:
32.2		 4j4vB-3ouoA:
38.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3u4a JMB19063

(compost
metagenome) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		5 GLY A 189
ASN A 229
ALA A 236
VAL A 198
MET A 200
 None
 1.42A 4j4vB-3u4aA:
0.0		 4j4vB-3u4aA:
17.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vi1 ALKALINE
METALLOPROTEINASE

(Pseudomonas
aeruginosa) 		PF08548
(Peptidase_M10_C)
PF13583
(Reprolysin_4) 		5 GLY A 318
ASN A 319
VAL A 313
GLN A 301
PHE A  12
 None
 1.47A 4j4vB-3vi1A:
0.0		 4j4vB-3vi1A:
19.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cu8 GLYCOSIDE HYDROLASE
2

(Streptococcus
pneumoniae) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF16355
(DUF4982) 		5 GLY A 734
ALA A 739
VAL A 736
GLN A 471
MET A 472
 None
None
None
EDO  A2003 (-4.2A)
None
 1.37A 4j4vB-4cu8A:
undetectable		 4j4vB-4cu8A:
14.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gvx 3-OXOACYL-[ACYL-CARR
IER PROTEIN]
REDUCTASE

(Burkholderia
multivorans) 		PF13561
(adh_short_C2) 		5 GLY A  14
ALA A 228
VAL A  12
PRO A  42
PHE A  46
 NAP  A 301 (-3.2A)
None
None
None
None
 1.18A 4j4vB-4gvxA:
undetectable		 4j4vB-4gvxA:
21.92
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4j4s NUCLEOCAPSID PROTEIN

(SFTS
phlebovirus) 		PF05733
(Tenui_N) 		9 GLY A  65
ASN A  66
ARG A  95
ALA A  96
VAL A 105
GLN A 109
PRO A 127
MET A 147
PHE A 177
 None
 0.76A 4j4vB-4j4sA:
35.8		 4j4vB-4j4sA:
98.79
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4j4w NUCLEOCAPSID

(Punta Toro
phlebovirus) 		PF05733
(Tenui_N) 		5 GLY A  64
ASN A  65
LYS A  66
PRO A 126
PHE A 175
 None
 0.81A 4j4vB-4j4wA:
20.4		 4j4vB-4j4wA:
37.85
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4j4x NP PROTEIN

(Sandfly fever
Naples
phlebovirus) 		PF05733
(Tenui_N) 		5 GLY A  70
ASN A  71
LYS A  72
PRO A 132
PHE A 182
 None
 0.67A 4j4vB-4j4xA:
30.4		 4j4vB-4j4xA:
36.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jre NITRITE EXTRUSION
PROTEIN 1

(Escherichia
coli) 		PF07690
(MFS_1) 		5 ARG A 305
ALA A 302
VAL A 178
GLN A 182
PRO A  81
 NO2  A 501 (-3.8A)
None
None
None
None
 1.18A 4j4vB-4jreA:
undetectable		 4j4vB-4jreA:
20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oqq DEOXYRIBONUCLEOSIDE
REGULATOR

(Bacillus
subtilis) 		PF04198
(Sugar-bind) 		5 GLY A  98
ALA A 296
VAL A 277
MET A 120
PHE A 160
 None
 1.31A 4j4vB-4oqqA:
undetectable		 4j4vB-4oqqA:
24.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qgo DNA-ENTRY NUCLEASE
(COMPETENCE-SPECIFIC
NUCLEASE)

(Streptococcus
agalactiae) 		PF01223
(Endonuclease_NS) 		5 GLY A  68
ASN A  67
VAL A  66
GLN A  64
PRO A 243
 None
 1.27A 4j4vB-4qgoA:
undetectable		 4j4vB-4qgoA:
19.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4z43 FLAVIN-DEPENDENT
TRYPTOPHAN
HALOGENASE PRNA

(Pseudomonas
fluorescens) 		PF04820
(Trp_halogenase) 		5 GLY A 285
ALA A 300
VAL A 246
GLN A 316
PRO A 344
 None
None
None
None
FAD  A 601 ( 4.3A)
 1.36A 4j4vB-4z43A:
undetectable		 4j4vB-4z43A:
19.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zyj DNMZ

(Streptomyces
peucetius) 		PF00441
(Acyl-CoA_dh_1)
PF02770
(Acyl-CoA_dh_M)
PF02771
(Acyl-CoA_dh_N) 		5 GLY A  99
ALA A 263
PRO A  54
MET A 175
PHE A  58
 None
 1.28A 4j4vB-4zyjA:
undetectable		 4j4vB-4zyjA:
20.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bp8 ENT-COPALYL
DIPHOSPHATE SYNTHASE

(Streptomyces
platensis) 		PF00432
(Prenyltrans)
PF13243
(SQHop_cyclase_C) 		5 GLY A 483
ARG A 516
ALA A 515
VAL A 461
MET A 465
 None
SO4  A 702 (-3.1A)
None
None
None
 1.35A 4j4vB-5bp8A:
0.7		 4j4vB-5bp8A:
20.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5df0 AC-CHIA

(Autographa
californica
multiple
nucleopolyhedrovirus) 		PF00704
(Glyco_hydro_18)
PF08329
(ChitinaseA_N) 		5 GLY A 461
ARG A 162
ALA A 532
VAL A 468
PRO A 458
 None
 1.36A 4j4vB-5df0A:
0.4		 4j4vB-5df0A:
18.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5h9f CRISPR SYSTEM
CASCADE SUBUNIT CASA

(Escherichia
coli) 		PF09481
(CRISPR_Cse1) 		5 GLY A 227
ASN A 207
LYS A 205
VAL A 229
PRO A 278
 None
 1.47A 4j4vB-5h9fA:
undetectable		 4j4vB-5h9fA:
19.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hxk ZINC-DEPENDENT
PEPTIDASE

(Thermus
thermophilus) 		PF00675
(Peptidase_M16)
PF05193
(Peptidase_M16_C) 		5 GLY A 188
ALA A 353
VAL A 186
PRO A  91
PHE A  89
 GLY  A 188 ( 0.0A)
ALA  A 353 ( 0.0A)
VAL  A 186 ( 0.6A)
PRO  A  91 ( 1.1A)
PHE  A  89 ( 1.3A)
 1.44A 4j4vB-5hxkA:
0.7		 4j4vB-5hxkA:
22.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jtv UBIQUITIN
CARBOXYL-TERMINAL
HYDROLASE 7

(Homo sapiens) 		PF00443
(UCH)
PF14533
(USP7_C2) 		5 GLY A 212
LYS A 209
GLN A 268
PRO A 471
PHE A 234
 None
 1.35A 4j4vB-5jtvA:
undetectable		 4j4vB-5jtvA:
16.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5tf0 GLYCOSYL HYDROLASE
FAMILY 3 N-TERMINAL
DOMAIN PROTEIN

(Bacteroides
intestinalis) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		5 GLY A 221
ASN A 261
ALA A 268
VAL A 230
MET A 232
 None
 1.38A 4j4vB-5tf0A:
0.0		 4j4vB-5tf0A:
15.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6arr ACETYL-COA
ACETYLTRANSFERASE

(Aspergillus
fumigatus) 		no annotation 5 GLY A 348
ASN A 344
ALA A 318
PRO A 225
PHE A 199
 None
 1.42A 4j4vB-6arrA:
undetectable		 4j4vB-6arrA:
17.34