SIMILAR PATTERNS OF AMINO ACIDS FOR 4ID5_A_T27A601_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1axd GLUTATHIONE
S-TRANSFERASE I


(Zea mays)
PF00043
(GST_C)
PF02798
(GST_N)
5 PRO A  55
LEU A   5
VAL A 206
VAL A   9
TYR A  28
None
1.47A 4id5A-1axdA:
0.0
4id5A-1axdA:
17.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1doi 2FE-2S FERREDOXIN

(Haloarcula
marismortui)
PF00111
(Fer2)
5 PRO A  60
VAL A   3
TYR A 115
TYR A   5
PRO A 106
K  A 204 ( 4.6A)
None
None
None
None
1.25A 4id5A-1doiA:
undetectable
4id5A-1doiA:
14.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kol FORMALDEHYDE
DEHYDROGENASE


(Pseudomonas
putida)
PF00107
(ADH_zinc_N)
PF08240
(ADH_N)
5 LEU A 249
VAL A 255
VAL A 212
TYR A 190
PRO A 253
None
1.08A 4id5A-1kolA:
0.0
4id5A-1kolA:
22.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1nmy SIMILAR TO
THYMIDYLATE KINASE
(DTMP KINASE)


(Homo sapiens)
PF02223
(Thymidylate_kin)
5 PRO A 127
LEU A 210
LYS A 118
VAL A 103
PRO A 120
None
1.30A 4id5A-1nmyA:
undetectable
4id5A-1nmyA:
17.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wdw TRYPTOPHAN SYNTHASE
BETA CHAIN 1


(Pyrococcus
furiosus)
PF00291
(PALP)
5 LEU B 311
VAL B 186
VAL B 226
PRO B 193
PRO B 306
None
None
PLP  B 400 ( 4.5A)
None
None
1.47A 4id5A-1wdwB:
0.5
4id5A-1wdwB:
22.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wic HYPOTHETICAL PROTEIN
RIKEN CDNA
6030424E15


(Mus musculus)
PF00635
(Motile_Sperm)
5 LEU A 131
VAL A  82
VAL A  55
TYR A  63
PHE A  29
None
1.43A 4id5A-1wicA:
0.0
4id5A-1wicA:
14.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wpx CARBOXYPEPTIDASE Y
INHIBITOR


(Saccharomyces
cerevisiae)
PF01161
(PBP)
5 PRO B 532
LEU B 708
VAL B 524
TYR B 515
TYR B 668
None
1.36A 4id5A-1wpxB:
1.2
4id5A-1wpxB:
16.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xea OXIDOREDUCTASE,
GFO/IDH/MOCA FAMILY


(Vibrio cholerae)
PF01408
(GFO_IDH_MocA)
5 LEU A  86
VAL A  67
VAL A  59
TYR A  56
PRO A  89
None
1.38A 4id5A-1xeaA:
0.0
4id5A-1xeaA:
19.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1z8l GLUTAMATE
CARBOXYPEPTIDASE II


(Homo sapiens)
PF02225
(PA)
PF04253
(TFR_dimer)
PF04389
(Peptidase_M28)
5 PRO A 243
VAL A 154
TYR A 151
PRO A  81
PHE A 383
None
1.43A 4id5A-1z8lA:
0.8
4id5A-1z8lA:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1z9l VESICLE-ASSOCIATED
MEMBRANE
PROTEIN-ASSOCIATED
PROTEIN A


(Rattus
norvegicus)
PF00635
(Motile_Sperm)
5 LEU A 119
VAL A  71
VAL A  44
TYR A  52
PHE A  18
None
1.39A 4id5A-1z9lA:
undetectable
4id5A-1z9lA:
12.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2b5i CYTOKINE RECEPTOR
COMMON GAMMA CHAIN


(Homo sapiens)
PF00041
(fn3)
PF09240
(IL6Ra-bind)
5 LEU C 140
VAL C 165
TYR C 197
TYR C 167
PHE C 186
None
1.46A 4id5A-2b5iC:
undetectable
4id5A-2b5iC:
16.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2erj CYTOKINE RECEPTOR
COMMON GAMMA CHAIN


(Homo sapiens)
PF00041
(fn3)
PF09240
(IL6Ra-bind)
5 LEU C 140
VAL C 165
TYR C 197
TYR C 167
PHE C 186
None
1.38A 4id5A-2erjC:
undetectable
4id5A-2erjC:
17.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2f5u VIRION PROTEIN UL25

(Human
alphaherpesvirus
1)
PF01499
(Herpes_UL25)
5 PRO A 574
LEU A 406
VAL A 416
PRO A 145
TYR A 562
None
1.31A 4id5A-2f5uA:
undetectable
4id5A-2f5uA:
20.03
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hnz REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H


(Human
immunodeficiency
virus 1)
PF00075
(RNase_H)
PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb)
8 LEU A 100
LYS A 103
VAL A 106
TYR A 181
TYR A 188
PRO A 225
PRO A 236
TYR A 318
PC0  A 999 ( 3.9A)
None
PC0  A 999 ( 4.8A)
PC0  A 999 (-3.9A)
PC0  A 999 (-4.1A)
None
PC0  A 999 ( 4.3A)
PC0  A 999 (-4.3A)
0.81A 4id5A-2hnzA:
36.1
4id5A-2hnzA:
98.50
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hnz REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H


(Human
immunodeficiency
virus 1)
PF00075
(RNase_H)
PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb)
8 LEU A 100
LYS A 103
VAL A 106
TYR A 188
PRO A 225
PHE A 227
PRO A 236
TYR A 318
PC0  A 999 ( 3.9A)
None
PC0  A 999 ( 4.8A)
PC0  A 999 (-4.1A)
None
PC0  A 999 (-4.7A)
PC0  A 999 ( 4.3A)
PC0  A 999 (-4.3A)
0.91A 4id5A-2hnzA:
36.1
4id5A-2hnzA:
98.50
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hnz REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H


(Human
immunodeficiency
virus 1)
PF00075
(RNase_H)
PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb)
8 LEU A 100
VAL A 106
VAL A 179
TYR A 181
TYR A 188
PRO A 225
PRO A 236
TYR A 318
PC0  A 999 ( 3.9A)
PC0  A 999 ( 4.8A)
PC0  A 999 (-4.4A)
PC0  A 999 (-3.9A)
PC0  A 999 (-4.1A)
None
PC0  A 999 ( 4.3A)
PC0  A 999 (-4.3A)
0.76A 4id5A-2hnzA:
36.1
4id5A-2hnzA:
98.50
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hnz REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H


(Human
immunodeficiency
virus 1)
PF00075
(RNase_H)
PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb)
8 LEU A 100
VAL A 106
VAL A 179
TYR A 188
PRO A 225
PHE A 227
PRO A 236
TYR A 318
PC0  A 999 ( 3.9A)
PC0  A 999 ( 4.8A)
PC0  A 999 (-4.4A)
PC0  A 999 (-4.1A)
None
PC0  A 999 (-4.7A)
PC0  A 999 ( 4.3A)
PC0  A 999 (-4.3A)
0.87A 4id5A-2hnzA:
36.1
4id5A-2hnzA:
98.50
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hnz REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H


(Human
immunodeficiency
virus 1)
PF00075
(RNase_H)
PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb)
9 PRO A  95
LEU A 100
LYS A 103
VAL A 106
PRO A 225
PHE A 227
TRP A 229
PRO A 236
TYR A 318
PC0  A 999 ( 4.9A)
PC0  A 999 ( 3.9A)
None
PC0  A 999 ( 4.8A)
None
PC0  A 999 (-4.7A)
PC0  A 999 ( 4.2A)
PC0  A 999 ( 4.3A)
PC0  A 999 (-4.3A)
0.75A 4id5A-2hnzA:
36.1
4id5A-2hnzA:
98.50
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hnz REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H


(Human
immunodeficiency
virus 1)
PF00075
(RNase_H)
PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb)
9 PRO A  95
LEU A 100
LYS A 103
VAL A 106
TYR A 181
PRO A 225
TRP A 229
PRO A 236
TYR A 318
PC0  A 999 ( 4.9A)
PC0  A 999 ( 3.9A)
None
PC0  A 999 ( 4.8A)
PC0  A 999 (-3.9A)
None
PC0  A 999 ( 4.2A)
PC0  A 999 ( 4.3A)
PC0  A 999 (-4.3A)
0.84A 4id5A-2hnzA:
36.1
4id5A-2hnzA:
98.50
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hnz REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H


(Human
immunodeficiency
virus 1)
PF00075
(RNase_H)
PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb)
9 PRO A  95
LEU A 100
VAL A 106
VAL A 179
PRO A 225
PHE A 227
TRP A 229
PRO A 236
TYR A 318
PC0  A 999 ( 4.9A)
PC0  A 999 ( 3.9A)
PC0  A 999 ( 4.8A)
PC0  A 999 (-4.4A)
None
PC0  A 999 (-4.7A)
PC0  A 999 ( 4.2A)
PC0  A 999 ( 4.3A)
PC0  A 999 (-4.3A)
0.71A 4id5A-2hnzA:
36.1
4id5A-2hnzA:
98.50
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hnz REVERSE
TRANSCRIPTASE/RIBONU
CLEASE H


(Human
immunodeficiency
virus 1)
PF00075
(RNase_H)
PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb)
9 PRO A  95
LEU A 100
VAL A 106
VAL A 179
TYR A 181
PRO A 225
TRP A 229
PRO A 236
TYR A 318
PC0  A 999 ( 4.9A)
PC0  A 999 ( 3.9A)
PC0  A 999 ( 4.8A)
PC0  A 999 (-4.4A)
PC0  A 999 (-3.9A)
None
PC0  A 999 ( 4.2A)
PC0  A 999 ( 4.3A)
PC0  A 999 (-4.3A)
0.80A 4id5A-2hnzA:
36.1
4id5A-2hnzA:
98.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2o4c ERYTHRONATE-4-PHOSPH
ATE DEHYDROGENASE


(Pseudomonas
aeruginosa)
PF00389
(2-Hacid_dh)
PF02826
(2-Hacid_dh_C)
PF11890
(DUF3410)
5 LEU A  42
TYR A 274
TYR A 271
PHE A  15
PRO A  10
None
1.22A 4id5A-2o4cA:
undetectable
4id5A-2o4cA:
22.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2p4b SIGMA-E FACTOR
REGULATORY PROTEIN
RSEB


(Escherichia
coli)
PF03888
(MucB_RseB)
PF17188
(MucB_RseB_C)
5 LEU A  31
VAL A 170
TYR A 156
PRO A 112
PRO A 167
None
1.22A 4id5A-2p4bA:
undetectable
4id5A-2p4bA:
18.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ze4 PHOSPHOLIPASE D

(Streptomyces
antibioticus)
PF13091
(PLDc_2)
5 PRO A 124
LEU A 164
VAL A 274
PRO A 462
PRO A 347
None
1.49A 4id5A-2ze4A:
undetectable
4id5A-2ze4A:
20.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fed GLUTAMATE
CARBOXYPEPTIDASE III


(Homo sapiens)
PF02225
(PA)
PF04253
(TFR_dimer)
PF04389
(Peptidase_M28)
5 PRO A 233
VAL A 144
TYR A 141
PRO A  71
PHE A 373
None
1.34A 4id5A-3fedA:
undetectable
4id5A-3fedA:
22.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3frn FLAGELLAR PROTEIN
FLGA


(Thermotoga
maritima)
PF13144
(ChapFlgA)
5 LEU A  56
VAL A 148
VAL A 139
PRO A 119
TYR A  58
None
1.49A 4id5A-3frnA:
undetectable
4id5A-3frnA:
20.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3l2e GLYCOCYAMINE KINASE
ALPHA CHAIN


(Namalycastis
sp. ST01)
PF00217
(ATP-gua_Ptrans)
PF02807
(ATP-gua_PtransN)
5 PRO A 120
LEU A 122
VAL A 248
VAL A 302
TYR A 290
None
1.16A 4id5A-3l2eA:
3.8
4id5A-3l2eA:
19.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3l7g XAA-PRO DIPEPTIDASE

(Alteromonas sp.)
PF00557
(Peptidase_M24)
5 PRO A  54
LEU A 340
LYS A 160
TYR A 153
TYR A 252
None
1.18A 4id5A-3l7gA:
undetectable
4id5A-3l7gA:
21.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3n3a PROTEIN NRDI

(Escherichia
coli)
PF07972
(Flavodoxin_NdrI)
5 LEU C  66
VAL C  46
VAL C  78
TYR C  42
PRO C  59
None
1.40A 4id5A-3n3aC:
undetectable
4id5A-3n3aC:
15.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bp8 OLIGOPEPTIDASE B

(Trypanosoma
brucei)
PF00326
(Peptidase_S9)
PF02897
(Peptidase_S9_N)
5 PRO A 638
LEU A 640
VAL A 590
VAL A 569
PRO A 656
None
1.45A 4id5A-4bp8A:
0.8
4id5A-4bp8A:
22.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4by6 GENERAL NEGATIVE
REGULATOR OF
TRANSCRIPTION
SUBUNIT 1


(Saccharomyces
cerevisiae)
PF04054
(Not1)
5 VAL A1802
VAL A1798
TYR A1792
PHE A1788
TYR A1839
None
1.50A 4id5A-4by6A:
undetectable
4id5A-4by6A:
23.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jlw GLUTATHIONE-INDEPEND
ENT FORMALDEHYDE
DEHYDROGENASE


(Pseudomonas
aeruginosa)
PF00107
(ADH_zinc_N)
PF08240
(ADH_N)
5 LEU A 250
VAL A 256
VAL A 213
TYR A 191
PRO A 254
None
1.12A 4id5A-4jlwA:
undetectable
4id5A-4jlwA:
21.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qfu GLYCOSIDE HYDROLASE
FAMILY 5


(Bacteroides
vulgatus)
PF12904
(Collagen_bind_2)
PF13204
(DUF4038)
5 LEU A 366
VAL A 473
TYR A 401
TYR A 472
PRO A 481
None
1.31A 4id5A-4qfuA:
undetectable
4id5A-4qfuA:
23.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4w5k ASPARTATE
AMINOTRANSFERASE,
MITOCHONDRIAL


(Trypanosoma
brucei)
PF00155
(Aminotran_1_2)
5 LEU A 134
TYR A 137
TYR A 139
PRO A 174
PRO A 121
None
1.14A 4id5A-4w5kA:
0.8
4id5A-4w5kA:
19.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wcj POLYSACCHARIDE
DEACETYLASE


(Ammonifex
degensii)
PF01522
(Polysacc_deac_1)
5 LEU A 242
VAL A  89
VAL A  40
TYR A  97
TYR A 219
None
1.31A 4id5A-4wcjA:
undetectable
4id5A-4wcjA:
18.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5agq BROMODOMAIN ADJACENT
TO ZINC FINGER
DOMAIN PROTEIN 2A


(Homo sapiens)
PF01429
(MBD)
5 VAL A 566
TYR A 553
PHE A 585
TRP A 551
PRO A 564
None
1.48A 4id5A-5agqA:
undetectable
4id5A-5agqA:
11.69
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5c24 HIV-1 REVERSE
TRANSCRIPTASE, P51
SUBUNIT


(Human
immunodeficiency
virus 1)
PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb)
5 LYS B 103
VAL B 106
VAL B 179
TYR B 181
TYR B 188
None
0.73A 4id5A-5c24B:
9.5
4id5A-5c24B:
96.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5evl BETA-LACTAMASE

(Chromobacterium
violaceum)
PF00144
(Beta-lactamase)
5 LEU A 110
VAL A 101
TYR A 136
PRO A 141
PRO A 145
None
1.32A 4id5A-5evlA:
0.4
4id5A-5evlA:
22.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ey5 LBCA-B

(synthetic
construct)
PF00291
(PALP)
5 LEU B 313
VAL B 188
VAL B 228
PRO B 195
PRO B 308
None
None
PLP  B 501 ( 4.6A)
None
None
1.46A 4id5A-5ey5B:
undetectable
4id5A-5ey5B:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i32 AQUAPORIN TIP2-1

(Arabidopsis
thaliana)
PF00230
(MIP)
5 PRO A  84
LEU A 109
VAL A 206
PHE A 211
TRP A 218
None
1.32A 4id5A-5i32A:
undetectable
4id5A-5i32A:
18.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xfm ALPHA-GLUCOSIDASE

(Bacteroides
thetaiotaomicron)
no annotation 5 VAL A 214
VAL A 239
TYR A 237
PHE A 153
TYR A  45
None
1.24A 4id5A-5xfmA:
undetectable
4id5A-5xfmA:
8.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xhw PUTATIVE
6-DEOXY-D-MANNOHEPTO
SE PATHWAY PROTEIN


(Yersinia
pseudotuberculosis)
no annotation 5 PRO A  25
LEU A  35
VAL A  75
PHE A  77
TYR A  36
None
1.45A 4id5A-5xhwA:
0.9
4id5A-5xhwA:
8.35