SIMILAR PATTERNS OF AMINO ACIDS FOR 4GKH_E_KANE301_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1nd4 AMINOGLYCOSIDE
3'-PHOSPHOTRANSFERAS
E

(Klebsiella
pneumoniae) 		PF01636
(APH) 		6 ASP A 157
ASP A 159
ASP A 190
ARG A 211
ASP A 261
GLU A 262
 KAN  A1300 (-3.7A)
KAN  A1300 (-3.2A)
KAN  A1300 ( 2.8A)
KAN  A1300 (-2.6A)
KAN  A1300 (-3.8A)
KAN  A1300 (-3.1A)
 0.30A 4gkhE-1nd4A:
31.6
4gkhF-1nd4A:
31.3		 4gkhE-1nd4A:
33.94
4gkhF-1nd4A:
33.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yoc PULLULANASE

(Klebsiella
oxytoca) 		PF02922
(CBM_48)
PF03714
(PUD)
PF11852
(DUF3372) 		5 GLN A 484
ASP A 884
ASN A 544
ASP A 541
SER A 558
 None
None
SO4  A2077 ( 4.7A)
CA  A2072 (-3.4A)
None
 1.45A 4gkhE-2yocA:
0.0
4gkhF-2yocA:
0.0		 4gkhE-2yocA:
12.06
4gkhF-2yocA:
12.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gua NON-STRUCTURAL
POLYPROTEIN

(Sindbis virus) 		PF01661
(Macro)
PF01707
(Peptidase_C9) 		5 ASP A1343
ASP A1485
ASN A1447
SER A1297
HIS A1329
 None
 1.39A 4gkhE-4guaA:
0.2
4gkhF-4guaA:
0.3		 4gkhE-4guaA:
19.58
4gkhF-4guaA:
19.58
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4h05 AMINOGLYCOSIDE-O-PHO
SPHOTRANSFERASE VIII

(Streptomyces
rimosus) 		PF01636
(APH) 		5 ASP A 153
ASP A 184
ARG A 207
ASP A 264
GLU A 265
 None
 0.64A 4gkhE-4h05A:
29.5
4gkhF-4h05A:
29.2		 4gkhE-4h05A:
34.03
4gkhF-4h05A:
34.03