SIMILAR PATTERNS OF AMINO ACIDS FOR 4FEV_C_KANC301

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1nd4 AMINOGLYCOSIDE
3'-PHOSPHOTRANSFERAS
E

(Klebsiella
pneumoniae) 		PF01636
(APH) 		6 ASP A 157
ASP A 159
ASP A 190
ARG A 211
ASP A 261
GLU A 262
 KAN  A1300 (-3.7A)
KAN  A1300 (-3.2A)
KAN  A1300 ( 2.8A)
KAN  A1300 (-2.6A)
KAN  A1300 (-3.8A)
KAN  A1300 (-3.1A)
 0.66A 4fevC-1nd4A:
32.2
4fevD-1nd4A:
31.6
4fevE-1nd4A:
31.1		 4fevC-1nd4A:
33.94
4fevD-1nd4A:
33.94
4fevE-1nd4A:
33.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1tq5 PROTEIN YHHW

(Escherichia
coli) 		PF02678
(Pirin) 		5 ASP A 148
ARG A 181
ASP A 159
SER A 153
ARG A 129
 None
 1.46A 4fevC-1tq5A:
0.0
4fevD-1tq5A:
0.2
4fevE-1tq5A:
0.5		 4fevC-1tq5A:
22.76
4fevD-1tq5A:
22.76
4fevE-1tq5A:
22.76
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4gkh AMINOGLYCOSIDE
3'-PHOSPHOTRANSFERAS
E APHA1-IAB

(Acinetobacter
baumannii) 		PF01636
(APH) 		7 ASP A 165
ASP A 167
ASP A 198
ARG A 219
ASN A 234
ASP A 268
GLU A 269
 KAN  A 301 (-3.7A)
KAN  A 301 (-3.3A)
KAN  A 301 (-3.0A)
KAN  A 301 (-3.3A)
KAN  A 301 (-3.9A)
KAN  A 301 (-3.8A)
KAN  A 301 (-3.2A)
 0.53A 4fevC-4gkhA:
41.5
4fevD-4gkhA:
39.6
4fevE-4gkhA:
40.0		 4fevC-4gkhA:
100.00
4fevD-4gkhA:
100.00
4fevE-4gkhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4h05 AMINOGLYCOSIDE-O-PHO
SPHOTRANSFERASE VIII

(Streptomyces
rimosus) 		PF01636
(APH) 		5 ASP A 153
ASP A 184
ARG A 207
ASP A 264
GLU A 265
 None
 0.42A 4fevC-4h05A:
30.1
4fevD-4h05A:
29.4
4fevE-4h05A:
29.2		 4fevC-4h05A:
34.03
4fevD-4h05A:
34.03
4fevE-4h05A:
34.03