SIMILAR PATTERNS OF AMINO ACIDS FOR 4FEU_E_KANE301_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gt9 KUMAMOLYSIN

(Bacillus
subtilis) 		PF00082
(Peptidase_S8) 		5 ASP 1 268
ASN 1  66
GLU 1  32
ASP 1  38
GLU 1  39
 None
 1.41A 4feuB-1gt91:
0.0
4feuE-1gt91:
0.0		 4feuB-1gt91:
24.04
4feuE-1gt91:
24.04
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1nd4 AMINOGLYCOSIDE
3'-PHOSPHOTRANSFERAS
E

(Klebsiella
pneumoniae) 		PF01636
(APH) 		7 ASP A 157
ASP A 159
ASP A 190
ARG A 211
GLU A 230
ASP A 261
GLU A 262
 KAN  A1300 (-3.7A)
KAN  A1300 (-3.2A)
KAN  A1300 ( 2.8A)
KAN  A1300 (-2.6A)
KAN  A1300 (-4.1A)
KAN  A1300 (-3.8A)
KAN  A1300 (-3.1A)
 0.79A 4feuB-1nd4A:
30.1
4feuE-1nd4A:
32.0		 4feuB-1nd4A:
33.94
4feuE-1nd4A:
33.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1obg PHOSPHORIBOSYLAMIDOI
MIDAZOLE-
SUCCINOCARBOXAMIDE
SYNTHASE

(Saccharomyces
cerevisiae) 		PF01259
(SAICAR_synt) 		5 ARG A  21
SER A 128
ASP A 215
ARG A 122
GLU A 118
 SO4  A 311 ( 3.7A)
SO4  A 308 (-2.7A)
SO4  A 308 ( 4.5A)
SO4  A 308 (-2.9A)
None
 1.34A 4feuB-1obgA:
2.7
4feuE-1obgA:
4.1		 4feuB-1obgA:
21.91
4feuE-1obgA:
21.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1t1e KUMAMOLISIN

(Bacillus sp.
MN-32) 		PF00082
(Peptidase_S8)
PF09286
(Pro-kuma_activ) 		5 ASP A 457
ASN A 255
GLU A 221
ASP A 227
GLU A 228
 None
 1.31A 4feuB-1t1eA:
1.8
4feuE-1t1eA:
0.3		 4feuB-1t1eA:
19.77
4feuE-1t1eA:
19.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nqx SECRETED
METALLOPROTEASE
MCP02

(Pseudoalteromonas
sp. SM9913) 		PF01447
(Peptidase_M4)
PF02868
(Peptidase_M4_C) 		5 ASP A 411
ARG A 413
ASN A 435
GLU A 377
GLU A 369
 None
None
None
CA  A 511 (-2.7A)
ZN  A   1 (-2.3A)
 1.20A 4feuB-3nqxA:
0.0
4feuE-3nqxA:
0.0		 4feuB-3nqxA:
22.36
4feuE-3nqxA:
22.36
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4gkh AMINOGLYCOSIDE
3'-PHOSPHOTRANSFERAS
E APHA1-IAB

(Acinetobacter
baumannii) 		PF01636
(APH) 		9 ASP A 165
ASP A 167
ASP A 198
ARG A 219
ASN A 234
CYH A 235
GLU A 238
ASP A 268
GLU A 269
 KAN  A 301 (-3.7A)
KAN  A 301 (-3.3A)
KAN  A 301 (-3.0A)
KAN  A 301 (-3.3A)
KAN  A 301 (-3.9A)
KAN  A 301 (-3.7A)
None
KAN  A 301 (-3.8A)
KAN  A 301 (-3.2A)
 0.32A 4feuB-4gkhA:
37.7
4feuE-4gkhA:
40.7		 4feuB-4gkhA:
100.00
4feuE-4gkhA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4gkh AMINOGLYCOSIDE
3'-PHOSPHOTRANSFERAS
E APHA1-IAB

(Acinetobacter
baumannii) 		PF01636
(APH) 		5 ASP A 167
ARG A 148
ASN A 234
ASP A 268
GLU A 269
 KAN  A 301 (-3.3A)
None
KAN  A 301 (-3.9A)
KAN  A 301 (-3.8A)
KAN  A 301 (-3.2A)
 1.37A 4feuB-4gkhA:
37.7
4feuE-4gkhA:
40.7		 4feuB-4gkhA:
100.00
4feuE-4gkhA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xj5 CYCLIC AMP-GMP
SYNTHASE

(Vibrio cholerae) 		no annotation 5 SER A 301
ASP A 291
ARG A 290
GLU A  28
GLU A 129
 GH3  A1014 (-2.6A)
None
EDO  A1004 ( 4.2A)
None
None
 1.46A 4feuB-4xj5A:
0.0
4feuE-4xj5A:
0.0		 4feuB-4xj5A:
22.22
4feuE-4xj5A:
22.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5of4 GENERAL
TRANSCRIPTION FACTOR
IIH SUBUNIT 2
TFIIH BASAL
TRANSCRIPTION FACTOR
COMPLEX HELICASE XPB
SUBUNIT,XPB,TFIIH
BASAL TRANSCRIPTION
FACTOR COMPLEX
HELICASE XPB SUBUNIT
TFIIH BASAL
TRANSCRIPTION FACTOR
COMPLEX HELICASE XPD
SUBUNIT

(Homo sapiens) 		PF04056
(Ssl1)
PF04851
(ResIII)
PF06733
(DEAD_2)
PF06777
(HBB)
PF13307
(Helicase_C_2)
PF16203
(ERCC3_RAD25_C) 		5 ARG A 325
SER E 202
ASP E  75
ARG E  80
GLU B 712
 None
 1.44A 4feuB-5of4A:
0.0
4feuE-5of4A:
0.0		 4feuB-5of4A:
20.36
4feuE-5of4A:
20.36