SIMILAR PATTERNS OF AMINO ACIDS FOR 4EJW_A_SRYA2001_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1b6r PROTEIN
(N5-CARBOXYAMINOIMID
AZOLE RIBONUCLEOTIDE
SYNTHETASE)

(Escherichia
coli) 		PF02222
(ATP-grasp) 		5 THR A 191
LEU A 183
GLN A 185
GLU A 342
SER A 345
 None
 1.44A 4ejwA-1b6rA:
0.0		 4ejwA-1b6rA:
20.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1elv COMPLEMENT C1S
COMPONENT

(Homo sapiens) 		PF00084
(Sushi)
PF00089
(Trypsin) 		5 ASN A 600
THR A 651
LEU A 637
ALA A 459
HIS A 496
 NES  A2003 (-3.2A)
None
None
None
NES  A2003 (-4.3A)
 1.37A 4ejwA-1elvA:
undetectable		 4ejwA-1elvA:
16.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gvl KALLIKREIN 6

(Homo sapiens) 		PF00089
(Trypsin) 		5 ASN A 179
THR A 229
LEU A 212
ALA A  56
HIS A  91
 None
 1.39A 4ejwA-1gvlA:
undetectable		 4ejwA-1gvlA:
20.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1m2v PROTEIN TRANSPORT
PROTEIN SEC24

(Saccharomyces
cerevisiae) 		PF00626
(Gelsolin)
PF04810
(zf-Sec23_Sec24)
PF04811
(Sec23_trunk)
PF04815
(Sec23_helical)
PF08033
(Sec23_BS) 		5 THR B 893
LEU B 896
ALA B 898
SER B 900
MET B 721
 None
 1.38A 4ejwA-1m2vB:
0.0		 4ejwA-1m2vB:
10.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1pd1 PROTEIN TRANSPORT
PROTEIN SEC24

(Saccharomyces
cerevisiae) 		PF00626
(Gelsolin)
PF04810
(zf-Sec23_Sec24)
PF04811
(Sec23_trunk)
PF04815
(Sec23_helical)
PF08033
(Sec23_BS) 		5 THR A 893
LEU A 896
ALA A 898
SER A 900
MET A 721
 None
 1.48A 4ejwA-1pd1A:
0.0		 4ejwA-1pd1A:
12.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1uru AMPHIPHYSIN

(Drosophila
melanogaster) 		PF03114
(BAR) 		5 GLN A  71
ALA A 107
HIS A 111
GLN A 116
ARG A  68
 None
 1.39A 4ejwA-1uruA:
1.6		 4ejwA-1uruA:
20.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wle SERYL-TRNA
SYNTHETASE

(Bos taurus) 		PF00587
(tRNA-synt_2b) 		5 ASN A 407
LEU A 355
GLN A 358
ALA A 435
GLU A 335
 None
None
None
None
SRP  A 900 (-2.8A)
 1.28A 4ejwA-1wleA:
0.3		 4ejwA-1wleA:
15.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2c2y METHYLENETETRAHYDROF
OLATE
DEHYDROGENASE-METHEN
YLTETRAHYDROFOLATE
CYCLOHYDROLASE

(Mycobacterium
tuberculosis) 		PF00763
(THF_DHG_CYH)
PF02882
(THF_DHG_CYH_C) 		5 THR A 179
LEU A 178
ALA A 159
HIS A 160
GLN A 203
 None
 1.38A 4ejwA-2c2yA:
0.0		 4ejwA-2c2yA:
17.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fej CELLULAR TUMOR
ANTIGEN P53

(Homo sapiens) 		PF00870
(P53) 		5 ALA A 161
SER A 215
HIS A 214
GLN A 192
ARG A 213
 None
 1.26A 4ejwA-2fejA:
undetectable		 4ejwA-2fejA:
18.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gwg 4-OXALOMESACONATE
HYDRATASE

(Rhodopseudomonas
palustris) 		PF04909
(Amidohydro_2) 		5 LEU A  46
ALA A  48
GLU A  52
GLN A  59
TYR A   9
 None
 1.26A 4ejwA-2gwgA:
0.0		 4ejwA-2gwgA:
18.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gwg 4-OXALOMESACONATE
HYDRATASE

(Rhodopseudomonas
palustris) 		PF04909
(Amidohydro_2) 		5 LEU A  46
ALA A  48
GLU A  52
SER A  49
TYR A   9
 None
 1.31A 4ejwA-2gwgA:
0.0		 4ejwA-2gwgA:
18.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2o56 PUTATIVE MANDELATE
RACEMASE

(Salmonella
enterica) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		5 LEU A 187
ALA A 222
GLU A 246
HIS A 221
GLN A 134
 None
 1.48A 4ejwA-2o56A:
undetectable		 4ejwA-2o56A:
18.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2uzp PROTEIN KINASE C
GAMMA TYPE

(Homo sapiens) 		PF00168
(C2) 		5 ASN A 206
THR A 208
LEU A 200
GLU A 284
ARG A 238
 None
 1.47A 4ejwA-2uzpA:
undetectable		 4ejwA-2uzpA:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vbi PYRUVATE
DECARBOXYLASE

(Acetobacter
pasteurianus) 		PF00205
(TPP_enzyme_M)
PF02775
(TPP_enzyme_C)
PF02776
(TPP_enzyme_N) 		5 ASN A  29
GLN A 124
ALA A  77
SER A  74
TYR A 123
 None
 1.30A 4ejwA-2vbiA:
0.0		 4ejwA-2vbiA:
13.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wvg PYRUVATE
DECARBOXYLASE

(Zymomonas
mobilis) 		PF00205
(TPP_enzyme_M)
PF02775
(TPP_enzyme_C)
PF02776
(TPP_enzyme_N) 		5 ASN A  29
GLN A 124
ALA A  77
SER A  74
TYR A 123
 None
 1.46A 4ejwA-2wvgA:
0.0		 4ejwA-2wvgA:
12.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yhe SEC-ALKYL SULFATASE

(Pseudomonas sp.
DSM 6611) 		PF00753
(Lactamase_B)
PF14863
(Alkyl_sulf_dimr)
PF14864
(Alkyl_sulf_C) 		5 ASN A 423
LEU A 413
ALA A 315
HIS A 317
TYR A 368
 None
None
None
SO4  A 801 (-4.3A)
None
 1.40A 4ejwA-2yheA:
undetectable		 4ejwA-2yheA:
13.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3f6u VITAMIN K-DEPENDENT
PROTEIN C HEAVY
CHAIN

(Homo sapiens) 		PF00089
(Trypsin) 		5 ASN H 179
THR H 229
LEU H 212
ALA H  56
HIS H  91
 None
 1.33A 4ejwA-3f6uH:
undetectable		 4ejwA-3f6uH:
20.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gx0 GST-LIKE PROTEIN
YFCG

(Escherichia
coli) 		PF00043
(GST_C)
PF02798
(GST_N) 		5 ASN A  11
LEU A 112
GLN A 176
ALA A 172
TYR A 141
 GDS  A 301 (-2.9A)
None
None
None
None
 1.25A 4ejwA-3gx0A:
1.5		 4ejwA-3gx0A:
20.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h4x PHOSPHATIDYLINOSITOL
-SPECIFIC
PHOSPHOLIPASE C1

(Streptomyces
antibioticus) 		PF16670
(PI-PLC-C1) 		5 ALA A 234
GLU A 192
HIS A 236
TYR A 247
ARG A 246
 None
None
EOH  A 358 (-4.0A)
None
None
 1.37A 4ejwA-3h4xA:
undetectable		 4ejwA-3h4xA:
18.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3sf6 GLUTARYL-COA
DEHYDROGENASE

(Mycolicibacterium
smegmatis) 		PF00441
(Acyl-CoA_dh_1)
PF02770
(Acyl-CoA_dh_M)
PF02771
(Acyl-CoA_dh_N) 		5 LEU A  95
ALA A 265
HIS A 367
TYR A 307
ARG A 270
 EDO  A 413 ( 4.5A)
None
None
None
EDO  A 413 (-3.9A)
 1.36A 4ejwA-3sf6A:
1.5		 4ejwA-3sf6A:
16.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3thw DNA MISMATCH REPAIR
PROTEIN MSH3

(Homo sapiens) 		PF00488
(MutS_V)
PF01624
(MutS_I)
PF05188
(MutS_II)
PF05192
(MutS_III) 		5 LEU B 585
ALA B 587
SER B 589
TYR B 912
ARG B 839
 None
 1.34A 4ejwA-3thwB:
undetectable		 4ejwA-3thwB:
12.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ttb EIGHT-HEME NITRITE
REDUCTASE

(Thioalkalivibrio
paradoxus) 		PF02335
(Cytochrom_C552) 		5 THR A 102
LEU A 103
ALA A  91
GLU A  89
SER A  97
 None
 1.27A 4ejwA-3ttbA:
1.9		 4ejwA-3ttbA:
13.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vvd AMINO ACID ABC
TRANSPORTER, BINDING
PROTEIN

(Thermus
thermophilus) 		PF00497
(SBP_bac_3) 		5 THR A 127
GLU A  19
SER A  78
HIS A  79
TYR A  96
 ORN  A 300 (-3.4A)
ORN  A 300 (-3.2A)
None
None
None
 1.38A 4ejwA-3vvdA:
undetectable		 4ejwA-3vvdA:
21.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cok PYRUVATE
DECARBOXYLASE

(Gluconacetobacter
diazotrophicus) 		PF00205
(TPP_enzyme_M)
PF02775
(TPP_enzyme_C)
PF02776
(TPP_enzyme_N) 		5 ASN A  29
GLN A 124
ALA A  77
SER A  74
TYR A 123
 None
 1.29A 4ejwA-4cokA:
undetectable		 4ejwA-4cokA:
14.07
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4eju TRANSCRIPTIONAL
REGULATOR TCAR

(Staphylococcus
epidermidis) 		PF12802
(MarR_2) 		11 ASN A  20
THR A  23
LEU A  27
GLN A  31
ALA A  38
GLU A  39
SER A  41
HIS A  42
MET A  46
TYR A 106
ARG A 110
 None
 0.42A 4ejwA-4ejuA:
19.1		 4ejwA-4ejuA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4eju TRANSCRIPTIONAL
REGULATOR TCAR

(Staphylococcus
epidermidis) 		PF12802
(MarR_2) 		11 THR A  23
LEU A  27
GLN A  31
ALA A  38
GLU A  39
SER A  41
HIS A  42
MET A  46
GLN A  61
TYR A 106
ARG A 110
 None
 0.67A 4ejwA-4ejuA:
19.1		 4ejwA-4ejuA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4f0q RESTRICTION
ENDONUCLEASE

(Mycobacterium
sp. JLS) 		PF04471
(Mrr_cat) 		5 THR A 437
LEU A 302
ALA A 304
SER A 305
ARG A 306
 None
 1.37A 4ejwA-4f0qA:
undetectable		 4ejwA-4f0qA:
16.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fix UDP-GALACTOFURANOSYL
TRANSFERASE GLFT2

(Mycobacterium
tuberculosis) 		PF13641
(Glyco_tranf_2_3) 		5 LEU A 558
ALA A 448
HIS A 446
GLN A 458
ARG A 577
 None
GOL  A 703 (-3.4A)
None
None
None
 1.12A 4ejwA-4fixA:
undetectable		 4ejwA-4fixA:
12.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gkr NECK AND C-TERMINAL
MOTOR DOMAIN OF KAR3

([Candida]
glabrata) 		PF00225
(Kinesin) 		5 ASN A 613
ALA A 591
SER A 560
GLN A 436
ARG A 561
 None
 1.34A 4ejwA-4gkrA:
undetectable		 4ejwA-4gkrA:
17.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jb6 3-OXOACYL-[ACYL-CARR
IER-PROTEIN]
SYNTHASE 2

(Pseudomonas
aeruginosa) 		PF00109
(ketoacyl-synt)
PF02801
(Ketoacyl-synt_C) 		5 THR A 166
LEU A 160
ALA A 188
SER A 104
TYR A 158
 None
 1.47A 4ejwA-4jb6A:
undetectable		 4ejwA-4jb6A:
16.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jtv HEMAGGLUTININ

(Influenza A
virus) 		PF00509
(Hemagglutinin) 		5 ASN A 326
THR A  31
ALA A 321
SER A  35
HIS A  34
 None
 1.37A 4ejwA-4jtvA:
undetectable		 4ejwA-4jtvA:
18.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4n2x DL-2-HALOACID
DEHALOGENASE

(Methylobacterium
sp. CPA1) 		PF10778
(DehI) 		5 ASN A 114
THR A 278
LEU A 121
ALA A  72
GLU A  69
 None
 1.41A 4ejwA-4n2xA:
undetectable		 4ejwA-4n2xA:
18.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4noo PUTATIVE
UNCHARACTERIZED
PROTEIN

(Vibrio cholerae) 		no annotation 5 ASN B  98
LEU B 105
ALA B  47
TYR B  71
ARG B  75
 None
 1.09A 4ejwA-4nooB:
2.2		 4ejwA-4nooB:
21.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4nso IMMUNITY PROTEIN

(Vibrio cholerae) 		no annotation 5 ASN B  98
LEU B 105
ALA B  47
TYR B  71
ARG B  75
 None
 1.11A 4ejwA-4nsoB:
2.0		 4ejwA-4nsoB:
19.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pk1 CHIMERA PROTEIN OF
OUTER MEMBRANE
PROTEIN ASSEMBLY
FACTORS BAMA AND
BAMB

(Escherichia
coli) 		PF07244
(POTRA)
PF13360
(PQQ_2) 		5 ASN A 185
ALA A1129
SER A1126
GLN A 179
TYR A1132
 None
 1.38A 4ejwA-4pk1A:
undetectable		 4ejwA-4pk1A:
13.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4v33 POLYSACCHARIDE
DEACETYLASE-LIKE
PROTEIN

(Bacillus
anthracis) 		PF01522
(Polysacc_deac_1) 		5 ASN A 197
THR A 183
LEU A 185
GLN A 118
ARG A 189
 None
EDO  A1365 (-4.5A)
None
None
None
 1.15A 4ejwA-4v33A:
undetectable		 4ejwA-4v33A:
17.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xeu TRANSKETOLASE

(Pseudomonas
aeruginosa) 		PF00456
(Transketolase_N)
PF02779
(Transket_pyr)
PF02780
(Transketolase_C) 		5 THR A 172
LEU A 169
ALA A 167
HIS A 164
ARG A 410
 None
 1.39A 4ejwA-4xeuA:
undetectable		 4ejwA-4xeuA:
13.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5dkx ALPHA
GLUCOSIDASE-LIKE
PROTEIN

(Chaetomium
thermophilum) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2)
PF17137
(DUF5110) 		5 THR A 774
LEU A 641
ALA A 643
SER A 644
TYR A 685
 None
 1.26A 4ejwA-5dkxA:
undetectable		 4ejwA-5dkxA:
9.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hh3 OXYA PROTEIN

(Actinoplanes
teichomyceticus) 		PF00067
(p450) 		5 LEU A 167
ALA A 169
GLU A 173
SER A 170
ARG A 171
 None
 1.31A 4ejwA-5hh3A:
1.1		 4ejwA-5hh3A:
16.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5npu ANC27

(synthetic
construct) 		no annotation 5 ASN A  29
GLN A 124
ALA A  77
SER A  74
TYR A 123
 None
 1.41A 4ejwA-5npuA:
undetectable		 4ejwA-5npuA:
18.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ubm COMPLEMENT C1S
SUBCOMPONENT

(Homo sapiens) 		no annotation 5 ASN A 615
THR A 666
LEU A 652
ALA A 474
HIS A 511
 None
 1.38A 4ejwA-5ubmA:
undetectable		 4ejwA-5ubmA:
19.84