SIMILAR PATTERNS OF AMINO ACIDS FOR 4EAH_F_ACTF401

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ayx MEMBRANE-BOUND
HYDROGENASE LARGE
SUBUNIT

(Hydrogenovibrio
marinus) 		PF00374
(NiFeSe_Hases) 		4 ARG A 437
THR A 274
GLN A 430
GLU A 474
 None
 1.46A 4eahB-3ayxA:
4.4
4eahC-3ayxA:
0.5
4eahF-3ayxA:
0.0		 4eahB-3ayxA:
20.92
4eahC-3ayxA:
20.92
4eahF-3ayxA:
20.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4aip FE-REGULATED PROTEIN
B

(Neisseria
meningitidis) 		PF00593
(TonB_dep_Rec)
PF07715
(Plug) 		4 ARG A 682
THR A 724
GLN A 670
GLU A 678
 None
 1.44A 4eahB-4aipA:
undetectable
4eahC-4aipA:
undetectable
4eahF-4aipA:
0.0		 4eahB-4aipA:
19.79
4eahC-4aipA:
19.79
4eahF-4aipA:
18.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5do7 ATP-BINDING CASSETTE
SUB-FAMILY G MEMBER
5

(Homo sapiens) 		PF00005
(ABC_tran)
PF01061
(ABC2_membrane) 		4 ARG A 199
THR A 221
GLN A 134
GLU A 218
 None
 1.30A 4eahB-5do7A:
0.3
4eahC-5do7A:
0.7
4eahF-5do7A:
0.7		 4eahB-5do7A:
21.44
4eahC-5do7A:
21.44
4eahF-5do7A:
18.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6f0k FE-S-CLUSTER-CONTAIN
ING HYDROGENASE
ACTH

(Rhodothermus
marinus;
Rhodothermus
marinus) 		no annotation
no annotation 		4 ARG B 968
THR H 144
GLN B 959
GLU B 963
 None
 1.33A 4eahB-6f0kB:
0.3
4eahC-6f0kB:
0.9
4eahF-6f0kB:
0.0		 4eahB-6f0kB:
undetectable
4eahC-6f0kB:
undetectable
4eahF-6f0kB:
undetectable