SIMILAR PATTERNS OF AMINO ACIDS FOR 4EAH_A_ACTA1003

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bn6 LACTADHERIN

(Bos taurus) 		PF00754
(F5_F8_type_C) 		4 ASN A  54
ARG A 148
ASN A 147
TRP A 145
 None
 1.25A 4eahA-3bn6A:
undetectable
4eahE-3bn6A:
undetectable		 4eahA-3bn6A:
16.92
4eahE-3bn6A:
16.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3m7p FN1 PROTEIN

(Homo sapiens) 		PF00039
(fn1)
PF00040
(fn2) 		4 ASN A 473
ARG A 534
VAL A 527
ASN A 526
 None
NAG  A1528 ( 4.8A)
None
None
 1.50A 4eahA-3m7pA:
undetectable
4eahE-3m7pA:
undetectable		 4eahA-3m7pA:
17.85
4eahE-3m7pA:
17.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5fp1 TONB-DEPENDENT
SIDEROPHORE RECEPTOR

(Acinetobacter
baumannii) 		PF00593
(TonB_dep_Rec)
PF07715
(Plug) 		4 ASN A 509
ARG A 548
VAL A 492
ASN A 460
 None
 1.45A 4eahA-5fp1A:
0.0
4eahE-5fp1A:
0.0		 4eahA-5fp1A:
20.53
4eahE-5fp1A:
20.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gmt ALGINATE LYASE

(Aplysia kurodai) 		no annotation 4 ASN A 189
ARG A 220
VAL A 191
ASN A 221
 None
 1.30A 4eahA-5gmtA:
undetectable
4eahE-5gmtA:
undetectable		 4eahA-5gmtA:
19.90
4eahE-5gmtA:
19.90