SIMILAR PATTERNS OF AMINO ACIDS FOR 4E3A_A_ADNA500_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ri6 PUTATIVE ISOMERASE
YBHE


(Escherichia
coli)
PF10282
(Lactonase)
4 SER A 302
TYR A 304
GLY A 295
PRO A 325
None
1.41A 4e3aA-1ri6A:
undetectable
4e3aA-1ri6A:
22.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1v7v CHITOBIOSE
PHOSPHORYLASE


(Vibrio
proteolyticus)
PF06165
(Glyco_transf_36)
PF17167
(Glyco_hydro_36)
4 SER A  49
TYR A  52
GLY A 345
PRO A 389
None
1.34A 4e3aA-1v7vA:
undetectable
4e3aA-1v7vA:
19.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wyt GLYCINE
DEHYDROGENASE
(DECARBOXYLATING)
SUBUNIT 1
GLYCINE
DEHYDROGENASE
SUBUNIT 2
(P-PROTEIN)


(Thermus
thermophilus)
PF02347
(GDC-P)
4 SER B 319
TYR A 163
GLY A 265
PRO B  95
None
1.31A 4e3aA-1wytB:
1.2
4e3aA-1wytB:
23.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1xf1 C5A PEPTIDASE

(Streptococcus
pyogenes)
PF00082
(Peptidase_S8)
PF02225
(PA)
PF06280
(fn3_5)
PF13585
(CHU_C)
4 SER A 284
TYR A 281
GLY A 286
PRO A 538
None
1.47A 4e3aA-1xf1A:
3.0
4e3aA-1xf1A:
17.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zfj INOSINE
MONOPHOSPHATE
DEHYDROGENASE


(Streptococcus
pyogenes)
PF00478
(IMPDH)
PF00571
(CBS)
4 SER A 308
TYR A 390
GLY A 344
PRO A 306
IMP  A 500 (-2.6A)
IMP  A 500 (-4.5A)
IMP  A 500 ( 3.7A)
None
1.46A 4e3aA-1zfjA:
1.8
4e3aA-1zfjA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zfj INOSINE
MONOPHOSPHATE
DEHYDROGENASE


(Streptococcus
pyogenes)
PF00478
(IMPDH)
PF00571
(CBS)
4 SER A 308
TYR A 390
GLY A 345
PRO A 306
IMP  A 500 (-2.6A)
IMP  A 500 (-4.5A)
IMP  A 500 (-4.0A)
None
1.28A 4e3aA-1zfjA:
1.8
4e3aA-1zfjA:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2b4w HYPOTHETICAL
PROTEIN, CONSERVED


(Leishmania
major)
PF08950
(DUF1861)
4 SER A 281
TYR A 250
GLY A 268
PRO A  36
None
1.08A 4e3aA-2b4wA:
undetectable
4e3aA-2b4wA:
22.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2b71 CYCLOPHILIN-LIKE
PROTEIN


(Plasmodium
yoelii)
PF00160
(Pro_isomerase)
4 SER A 136
TYR A 108
GLY A 100
PRO A  94
None
1.49A 4e3aA-2b71A:
undetectable
4e3aA-2b71A:
20.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cu0 INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Pyrococcus
horikoshii)
PF00478
(IMPDH)
PF00571
(CBS)
4 SER A 299
TYR A 381
GLY A 335
PRO A 297
XMP  A1001 (-2.7A)
XMP  A1001 (-4.5A)
XMP  A1001 (-3.4A)
None
1.48A 4e3aA-2cu0A:
1.8
4e3aA-2cu0A:
22.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cu0 INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Pyrococcus
horikoshii)
PF00478
(IMPDH)
PF00571
(CBS)
4 SER A 299
TYR A 381
GLY A 336
PRO A 297
XMP  A1001 (-2.7A)
XMP  A1001 (-4.5A)
XMP  A1001 (-3.6A)
None
1.31A 4e3aA-2cu0A:
1.8
4e3aA-2cu0A:
22.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3jyf 2',3'-CYCLIC
NUCLEOTIDE
2'-PHOSPHODIESTERASE
/3'-NUCLEOTIDASE
BIFUNCTIONAL
PERIPLASMIC PROTEIN


(Klebsiella
pneumoniae)
PF00149
(Metallophos)
4 SER A 230
TYR A 227
GLY A 267
PRO A 269
None
1.44A 4e3aA-3jyfA:
1.9
4e3aA-3jyfA:
22.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kzv UNCHARACTERIZED
OXIDOREDUCTASE
YIR035C


(Saccharomyces
cerevisiae)
PF00106
(adh_short)
4 SER A 243
TYR A 241
GLY A 179
PRO A 221
None
1.27A 4e3aA-3kzvA:
6.6
4e3aA-3kzvA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nx4 PUTATIVE
OXIDOREDUCTASE


(Salmonella
enterica)
PF00107
(ADH_zinc_N)
PF08240
(ADH_N)
4 SER A 117
TYR A 291
GLY A 115
PRO A 113
None
1.48A 4e3aA-3nx4A:
3.2
4e3aA-3nx4A:
23.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pnu DIHYDROOROTASE

(Campylobacter
jejuni)
PF04909
(Amidohydro_2)
4 SER A 107
TYR A 113
GLY A 105
PRO A  95
None
1.18A 4e3aA-3pnuA:
undetectable
4e3aA-3pnuA:
26.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tsd INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Bacillus
anthracis)
PF00478
(IMPDH)
PF00571
(CBS)
4 SER A 306
TYR A 388
GLY A 342
PRO A 304
XMP  A 500 (-2.7A)
XMP  A 500 (-4.8A)
XMP  A 500 (-3.3A)
None
1.43A 4e3aA-3tsdA:
2.9
4e3aA-3tsdA:
23.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tsd INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Bacillus
anthracis)
PF00478
(IMPDH)
PF00571
(CBS)
4 SER A 306
TYR A 388
GLY A 343
PRO A 304
XMP  A 500 (-2.7A)
XMP  A 500 (-4.8A)
XMP  A 500 (-3.8A)
None
1.29A 4e3aA-3tsdA:
2.9
4e3aA-3tsdA:
23.97
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3ubo ADENOSINE KINASE

(Sinorhizobium
meliloti)
PF00294
(PfkB)
4 SER A  60
TYR A 158
GLY A 275
PRO A 314
ADN  A 353 (-4.6A)
ADN  A 353 (-3.6A)
ADN  A 353 (-3.7A)
ADN  A 353 (-4.2A)
0.20A 4e3aA-3uboA:
57.0
4e3aA-3uboA:
71.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vi3 INTEGRIN ALPHA-5

(Homo sapiens)
PF01839
(FG-GAP)
PF08441
(Integrin_alpha2)
4 SER A 229
TYR A 261
GLY A 190
PRO A 183
None
NAG  A2009 (-4.7A)
None
None
1.12A 4e3aA-3vi3A:
undetectable
4e3aA-3vi3A:
19.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4egv ACETYL-COA
ACETYLTRANSFERASE


(Mycolicibacterium
smegmatis)
no annotation 4 SER A 484
TYR A 451
GLY A 486
PRO A 488
None
1.30A 4e3aA-4egvA:
undetectable
4e3aA-4egvA:
24.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fxs INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Vibrio cholerae)
PF00478
(IMPDH)
PF00571
(CBS)
4 SER A 305
TYR A 387
GLY A 341
PRO A 303
IMP  A 701 (-2.6A)
IMP  A 701 (-4.6A)
IMP  A 701 (-3.5A)
None
1.50A 4e3aA-4fxsA:
undetectable
4e3aA-4fxsA:
21.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fxs INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Vibrio cholerae)
PF00478
(IMPDH)
PF00571
(CBS)
4 SER A 305
TYR A 387
GLY A 342
PRO A 303
IMP  A 701 (-2.6A)
IMP  A 701 (-4.6A)
IMP  A 701 (-3.5A)
None
1.34A 4e3aA-4fxsA:
undetectable
4e3aA-4fxsA:
21.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4mc0 PUTATIVE
SESQUITERPENE
CYCLASE


(Kitasatospora
setae)
no annotation 4 SER A 178
TYR A 153
GLY A 180
PRO A 182
None
1.40A 4e3aA-4mc0A:
undetectable
4e3aA-4mc0A:
22.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4o9x TCDB2, TCCC3

(Photorhabdus
luminescens)
PF03534
(SpvB)
PF12255
(TcdB_toxin_midC)
PF12256
(TcdB_toxin_midN)
4 SER A 325
TYR A 327
GLY A 673
PRO A 654
None
1.46A 4e3aA-4o9xA:
undetectable
4e3aA-4o9xA:
10.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wk4 INTEGRIN ALPHA-5

(Homo sapiens)
PF01839
(FG-GAP)
4 SER A 229
TYR A 261
GLY A 190
PRO A 183
None
NAG  A 505 (-4.2A)
None
None
0.99A 4e3aA-4wk4A:
undetectable
4e3aA-4wk4A:
19.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zzq CELLULOSE
1,4-BETA-CELLOBIOSID
ASE


(Dictyostelium
discoideum)
PF00840
(Glyco_hydro_7)
4 SER A 348
TYR A 251
GLY A 259
PRO A 228
None
1.48A 4e3aA-4zzqA:
undetectable
4e3aA-4zzqA:
21.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lvc VP1

(Aichivirus A)
no annotation 4 SER a 165
TYR a 163
GLY a 194
PRO a 125
None
1.48A 4e3aA-5lvca:
undetectable
4e3aA-5lvca:
21.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ou3 INOSINE-5'-MONOPHOSP
HATE
DEHYDROGENASE,INOSIN
E-5'-MONOPHOSPHATE
DEHYDROGENASE


(Mycolicibacterium
thermoresistibile)
no annotation 4 SER A 199
TYR A 281
GLY A 235
PRO A 197
IMP  A 400 (-2.6A)
IMP  A 400 (-4.6A)
IMP  A 400 (-3.5A)
None
1.47A 4e3aA-5ou3A:
1.9
4e3aA-5ou3A:
13.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ou3 INOSINE-5'-MONOPHOSP
HATE
DEHYDROGENASE,INOSIN
E-5'-MONOPHOSPHATE
DEHYDROGENASE


(Mycolicibacterium
thermoresistibile)
no annotation 4 SER A 199
TYR A 281
GLY A 236
PRO A 197
IMP  A 400 (-2.6A)
IMP  A 400 (-4.6A)
IMP  A 400 (-3.6A)
None
1.31A 4e3aA-5ou3A:
1.9
4e3aA-5ou3A:
13.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5tgf UNCHARACTERIZED
PROTEIN


(Bacteroides
dorei)
PF00144
(Beta-lactamase)
4 SER A 322
TYR A  26
GLY A 288
PRO A 287
None
1.28A 4e3aA-5tgfA:
undetectable
4e3aA-5tgfA:
21.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5tw1 DNA-DIRECTED RNA
POLYMERASE SUBUNIT
BETA


(Mycolicibacterium
smegmatis)
PF00562
(RNA_pol_Rpb2_6)
PF04560
(RNA_pol_Rpb2_7)
PF04561
(RNA_pol_Rpb2_2)
PF04563
(RNA_pol_Rpb2_1)
PF04565
(RNA_pol_Rpb2_3)
PF10385
(RNA_pol_Rpb2_45)
4 SER C1036
TYR C1094
GLY C1038
PRO C1047
None
1.48A 4e3aA-5tw1C:
undetectable
4e3aA-5tw1C:
15.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5upy INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Listeria
monocytogenes)
PF00478
(IMPDH)
4 SER A 306
TYR A 388
GLY A 342
PRO A 304
IMP  A 500 (-2.6A)
IMP  A 500 (-4.6A)
IMP  A 500 ( 3.7A)
None
1.46A 4e3aA-5upyA:
undetectable
4e3aA-5upyA:
23.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5upy INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Listeria
monocytogenes)
PF00478
(IMPDH)
4 SER A 306
TYR A 388
GLY A 343
PRO A 304
IMP  A 500 (-2.6A)
IMP  A 500 (-4.6A)
IMP  A 500 (-3.6A)
None
1.30A 4e3aA-5upyA:
undetectable
4e3aA-5upyA:
23.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5uuw INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Bacillus
anthracis)
PF00478
(IMPDH)
4 SER A 306
TYR A 388
GLY A 342
PRO A 304
IMP  A 501 (-2.8A)
IMP  A 501 (-4.7A)
IMP  A 501 (-3.1A)
None
1.48A 4e3aA-5uuwA:
undetectable
4e3aA-5uuwA:
27.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5uuw INOSINE-5'-MONOPHOSP
HATE DEHYDROGENASE


(Bacillus
anthracis)
PF00478
(IMPDH)
4 SER A 306
TYR A 388
GLY A 343
PRO A 304
IMP  A 501 (-2.8A)
IMP  A 501 (-4.7A)
IMP  A 501 (-3.9A)
None
1.33A 4e3aA-5uuwA:
undetectable
4e3aA-5uuwA:
27.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5uze INOSINE-5'-MONOPHOSP
HATE
DEHYDROGENASE,INOSIN
E-5'-MONOPHOSPHATE
DEHYDROGENASE


(Clostridium
perfringens)
PF00478
(IMPDH)
4 SER A 301
TYR A 383
GLY A 337
PRO A 299
IMP  A 500 (-2.5A)
IMP  A 500 (-4.8A)
IMP  A 500 (-3.4A)
None
1.46A 4e3aA-5uzeA:
3.0
4e3aA-5uzeA:
22.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5uze INOSINE-5'-MONOPHOSP
HATE
DEHYDROGENASE,INOSIN
E-5'-MONOPHOSPHATE
DEHYDROGENASE


(Clostridium
perfringens)
PF00478
(IMPDH)
4 SER A 301
TYR A 383
GLY A 338
PRO A 299
IMP  A 500 (-2.5A)
IMP  A 500 (-4.8A)
IMP  A 500 (-3.4A)
None
1.31A 4e3aA-5uzeA:
3.0
4e3aA-5uzeA:
22.96