SIMILAR PATTERNS OF AMINO ACIDS FOR 4BVV_A_CPFA1081

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1a0h MEIZOTHROMBIN

(Bos taurus) 		PF00051
(Kringle)
PF09396
(Thrombin_light) 		5 ASP A 223
ASP A 225
TRP A 230
TYR A 232
PHE A 240
 None
 0.68A 4bvvA-1a0hA:
9.1		 4bvvA-1a0hA:
23.02
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hpp PROTHROMBIN

(Bos taurus) 		PF00051
(Kringle) 		5 ASP P 354
ASP P 356
TRP P 361
TYR P 363
PHE P 371
 None
 0.94A 4bvvA-2hppP:
10.6		 4bvvA-2hppP:
36.25
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2hpq PROTHROMBIN

(Homo sapiens) 		PF00051
(Kringle) 		5 ASP P 354
ASP P 356
TRP P 361
TYR P 363
PHE P 371
 None
 0.82A 4bvvA-2hpqP:
10.6		 4bvvA-2hpqP:
40.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wyh ALPHA-MANNOSIDASE

(Streptococcus
pyogenes) 		PF01074
(Glyco_hydro_38)
PF07748
(Glyco_hydro_38C)
PF09261
(Alpha-mann_mid) 		5 SER A 221
THR A 222
ASP A 267
ASP A 263
LEU A 186
 None
 1.40A 4bvvA-2wyhA:
undetectable		 4bvvA-2wyhA:
7.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3daw TWINFILIN-1

(Mus musculus) 		PF00241
(Cofilin_ADF) 		5 HIS B 243
SER B 244
ASP B 310
TYR B 241
LEU B 222
 None
 1.32A 4bvvA-3dawB:
undetectable		 4bvvA-3dawB:
18.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e6p PROTHROMBIN

(Homo sapiens) 		PF00051
(Kringle)
PF09396
(Thrombin_light) 		5 ASP L 223
ASP L 225
TRP L 230
TYR L 232
PHE L 240
 None
 0.53A 4bvvA-3e6pL:
10.8		 4bvvA-3e6pL:
25.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k65 PROTHROMBIN

(Homo sapiens) 		PF00051
(Kringle) 		5 ASP A 223
ASP A 225
TRP A 230
TYR A 232
PHE A 240
 None
 0.49A 4bvvA-3k65A:
11.4		 4bvvA-3k65A:
28.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3nxp PRETHROMBIN-1

(Homo sapiens) 		PF00051
(Kringle)
PF00089
(Trypsin)
PF09396
(Thrombin_light) 		5 ASP A 223
ASP A 225
TRP A 230
TYR A 232
PHE A 240
 None
None
None
None
GOL  A 704 (-3.8A)
 0.62A 4bvvA-3nxpA:
0.0		 4bvvA-3nxpA:
12.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4duu PLASMINOGEN

(Homo sapiens) 		PF00024
(PAN_1)
PF00051
(Kringle)
PF00089
(Trypsin) 		6 HIS A 494
ASP A 516
ASP A 518
TRP A 523
TYR A 525
LEU A 532
 None
 0.73A 4bvvA-4duuA:
15.6		 4bvvA-4duuA:
26.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4duu PLASMINOGEN

(Homo sapiens) 		PF00024
(PAN_1)
PF00051
(Kringle)
PF00089
(Trypsin) 		6 HIS A 494
SER A 495
ASP A 518
TRP A 523
TYR A 525
LEU A 532
 None
 0.92A 4bvvA-4duuA:
15.6		 4bvvA-4duuA:
26.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4eto PROTEIN S100-A4

(Homo sapiens) 		PF01023
(S_100) 		5 SER A  14
THR A  15
TYR A  75
LEU A  79
PHE A  78
 None
 1.11A 4bvvA-4etoA:
undetectable		 4bvvA-4etoA:
19.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hzh PROTHROMBIN

(Homo sapiens) 		PF00051
(Kringle)
PF00089
(Trypsin)
PF09396
(Thrombin_light) 		5 ASP A 223
ASP A 225
TRP A 230
TYR A 232
PHE A 240
 None
 0.77A 4bvvA-4hzhA:
undetectable		 4bvvA-4hzhA:
12.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rap GLYCOSYLTRANSFERASE
TIBC

(Escherichia
coli) 		PF01075
(Glyco_transf_9) 		5 SER A  67
ASP A  47
ASP A  49
TYR A  70
PHE A  71
 None
 1.35A 4bvvA-4rapA:
undetectable		 4bvvA-4rapA:
13.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ttp DEPHOSPHO-COA KINASE

(Legionella
pneumophila) 		PF01121
(CoaE) 		5 HIS A 196
ASP A 177
ASP A 176
TYR A 113
LEU A 115
 None
 1.48A 4bvvA-4ttpA:
undetectable		 4bvvA-4ttpA:
15.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a22 VESICULAR STOMATITIS
VIRUS L POLYMERASE

(Vesicular
stomatitis
virus) 		PF00946
(Mononeg_RNA_pol)
PF14314
(Methyltrans_Mon)
PF14318
(Mononeg_mRNAcap) 		5 HIS A  92
SER A  89
THR A  88
ASP A  48
LEU A 536
 None
 1.03A 4bvvA-5a22A:
undetectable		 4bvvA-5a22A:
3.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a2a APO FORM OF
ANOXYBACILLUS
ALPHA-AMYLASES

(Anoxybacillus
ayderensis) 		PF00128
(Alpha-amylase) 		5 HIS A 217
THR A 214
ASP A 310
ASP A 358
LEU A 180
 None
ACT  A1479 ( 4.2A)
ACT  A1479 ( 4.9A)
ACT  A1478 (-2.7A)
None
 1.46A 4bvvA-5a2aA:
undetectable		 4bvvA-5a2aA:
12.50
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5hpg PLASMINOGEN

(Homo sapiens) 		PF00051
(Kringle) 		6 HIS A  33
SER A  34
ASP A  57
TRP A  62
TYR A  64
LEU A  71
 None
 0.68A 4bvvA-5hpgA:
17.1		 4bvvA-5hpgA:
82.72