SIMILAR PATTERNS OF AMINO ACIDS FOR 4BCS_A_ACTA1126

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1m1j FIBRINOGEN ALPHA
SUBUNIT

(Gallus gallus) 		PF08702
(Fib_alpha) 		4 THR A 129
GLN A 125
ARG A 126
THR A 122
 None
 1.32A 4bcsA-1m1jA:
undetectable		 4bcsA-1m1jA:
13.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mu2 HIV-2 RT

(Human
immunodeficiency
virus 2) 		PF00078
(RVT_1)
PF06815
(RVT_connect)
PF06817
(RVT_thumb) 		4 THR B 338
GLN B 330
ARG B 423
THR B 418
 None
 1.48A 4bcsA-1mu2B:
0.0		 4bcsA-1mu2B:
17.66
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1te1 ENDO-1,4-XYLANASE

(Talaromyces
funiculosus) 		PF00457
(Glyco_hydro_11) 		4 THR B 132
GLN B 120
ARG B 121
THR B 119
 None
 1.36A 4bcsA-1te1B:
0.0		 4bcsA-1te1B:
21.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2dck XYLANASE J

(Bacillus sp.
41M-1) 		PF00457
(Glyco_hydro_11)
PF03422
(CBM_6) 		4 THR A 139
GLN A 141
ARG A 128
THR A 126
 None
 1.33A 4bcsA-2dckA:
0.0		 4bcsA-2dckA:
17.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2i13 AART

(Mus musculus) 		PF00096
(zf-C2H2)
PF13465
(zf-H2C2_2) 		4 THR A  73
GLN A  69
ARG A  70
THR A  66
 None
 1.31A 4bcsA-2i13A:
0.0		 4bcsA-2i13A:
18.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2mtc DECORIN-BINDING
PROTEIN A

(Borreliella
burgdorferi) 		PF02352
(Decorin_bind) 		4 THR A 172
GLN A 168
ARG A 169
THR A 165
 None
 1.25A 4bcsA-2mtcA:
undetectable		 4bcsA-2mtcA:
22.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xdr BETAINE ALDEHYDE
DEHYDROGENASE

(Pseudomonas
aeruginosa) 		PF00171
(Aldedh) 		4 THR A 206
GLN A  39
ARG A  40
THR A  23
 None
 1.44A 4bcsA-2xdrA:
0.0		 4bcsA-2xdrA:
14.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yrj ZINC FINGER PROTEIN
473

(Homo sapiens) 		PF00096
(zf-C2H2) 		4 THR A  36
GLN A  32
ARG A  33
THR A  29
 None
 1.33A 4bcsA-2yrjA:
0.0		 4bcsA-2yrjA:
19.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ytg ZINC FINGER PROTEIN
95 HOMOLOG

(Homo sapiens) 		PF00096
(zf-C2H2) 		4 THR A  36
GLN A  32
ARG A  33
THR A  29
 None
 1.18A 4bcsA-2ytgA:
undetectable		 4bcsA-2ytgA:
17.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3f8n PEROXIDE OPERON
REGULATOR

(Bacillus
subtilis) 		PF01475
(FUR) 		4 THR A  58
GLN A  23
ARG A  24
THR A  21
 None
 1.19A 4bcsA-3f8nA:
0.0		 4bcsA-3f8nA:
22.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3icv LIPASE B

(Moesziomyces
antarcticus) 		no annotation 4 THR A 214
GLN A 281
ARG A 161
THR A 279
 None
 1.49A 4bcsA-3icvA:
0.0		 4bcsA-3icvA:
18.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3oc4 OXIDOREDUCTASE,
PYRIDINE
NUCLEOTIDE-DISULFIDE
FAMILY

(Enterococcus
faecalis) 		PF02852
(Pyr_redox_dim)
PF07992
(Pyr_redox_2) 		4 THR A 404
GLN A 406
ARG A 379
THR A 407
 None
 1.33A 4bcsA-3oc4A:
0.0		 4bcsA-3oc4A:
15.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3r4k TRANSCRIPTIONAL
REGULATOR, ICLR
FAMILY

(Ruegeria sp.
TM1040) 		PF01614
(IclR)
PF09339
(HTH_IclR) 		4 THR A 223
GLN A 226
ARG A 228
THR A 229
 None
 1.17A 4bcsA-3r4kA:
undetectable		 4bcsA-3r4kA:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zv7 LIPASE B

(Moesziomyces
antarcticus) 		no annotation 4 THR A 180
GLN A 247
ARG A 127
THR A 245
 None
 1.50A 4bcsA-4zv7A:
undetectable		 4bcsA-4zv7A:
17.25