SIMILAR PATTERNS OF AMINO ACIDS FOR 4B9Z_A_ACRA1818_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1v4a GLUTAMATE-AMMONIA-LI
GASE
ADENYLYLTRANSFERASE

(Escherichia
coli) 		PF03710
(GlnE)
PF08335
(GlnD_UR_UTase) 		4 PHE A 411
PHE A 376
TRP A 414
GLN A 416
 None
 1.45A 4b9zA-1v4aA:
0.0		 4b9zA-1v4aA:
21.15
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4b9y ALPHA-GLUCOSIDASE,
PUTATIVE, ADG31B

(Cellvibrio
japonicus) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2)
PF16338
(DUF4968)
PF17137
(DUF5110) 		5 PHE A 271
PHE A 377
TRP A 410
TRP A 477
GLN A 542
 None
 0.47A 4b9zA-4b9yA:
66.0		 4b9zA-4b9yA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kd5 METALLOPEPTIDASE

(Bacteroides
thetaiotaomicron) 		PF13402
(Peptidase_M60)
PF17291
(M60-like_N) 		4 PHE A 420
PHE A 530
TRP A 386
GLN A 383
 None
 1.43A 4b9zA-5kd5A:
0.0		 4b9zA-5kd5A:
21.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nqd ARSENITE OXIDASE
LARGE SUBUNIT AIOA
[3FE-4S] CLUSTER,
MO-MOLYBDOPTERIN
COFACTOR-BINDING
ACTIVE SITE
ARSENITE OXIDASE
SMALL SUBUNIT AIOB
RIESKE [2FE-2S]
CLUSTER

(Rhizobium sp.
NT-26) 		no annotation 4 PHE B 125
PHE A 247
TRP B 138
GLN A 293
 None
 1.39A 4b9zA-5nqdB:
1.8		 4b9zA-5nqdB:
7.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5svd NUCLEOLAR PROTEIN 9

(Saccharomyces
cerevisiae) 		PF00806
(PUF) 		4 PHE A 351
PHE A 291
TRP A 321
GLN A 305
 PHE  A 351 ( 1.3A)
PHE  A 291 ( 1.3A)
TRP  A 321 ( 0.5A)
GLN  A 305 ( 0.6A)
 1.44A 4b9zA-5svdA:
0.0		 4b9zA-5svdA:
19.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xxi CYTOCHROME P450 2C9

(Homo sapiens) 		no annotation 4 PHE A 476
PHE A  69
TRP A 212
GLN A 214
 LSN  A 503 (-3.8A)
LSN  A 503 ( 4.8A)
None
LSN  A 503 ( 3.0A)
 1.15A 4b9zA-5xxiA:
0.0		 4b9zA-5xxiA:
20.67