SIMILAR PATTERNS OF AMINO ACIDS FOR 4AFT_C_QMRC301

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3jux PROTEIN TRANSLOCASE
SUBUNIT SECA

(Thermotoga
maritima) 		PF00271
(Helicase_C)
PF01043
(SecA_PP_bind)
PF07516
(SecA_SW)
PF07517
(SecA_DEAD) 		5 VAL A 149
TYR A 213
CYH A 215
VAL A 159
ILE A 207
 None
 1.15A 4aftC-3juxA:
0.0
4aftD-3juxA:
0.0		 4aftC-3juxA:
13.52
4aftD-3juxA:
13.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3opw DNA
DAMAGE-RESPONSIVE
TRANSCRIPTIONAL
REPRESSOR RPH1

(Saccharomyces
cerevisiae) 		PF02373
(JmjC)
PF02375
(JmjN) 		5 TYR A 242
CYH A  31
TYR A 318
VAL A  46
ILE A 244
 None
 1.39A 4aftC-3opwA:
0.0
4aftD-3opwA:
0.0		 4aftC-3opwA:
20.11
4aftD-3opwA:
20.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pl1 PYRAZINAMIDASE/NICOT
INAMIDASE PNCA
(PZASE)

(Mycobacterium
tuberculosis) 		PF00857
(Isochorismatase) 		5 TYR A  41
VAL A 130
TYR A  34
VAL A 139
ILE A   6
 None
 0.90A 4aftC-3pl1A:
0.0
4aftD-3pl1A:
0.0		 4aftC-3pl1A:
21.37
4aftD-3pl1A:
21.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gvl TRKA DOMAIN PROTEIN

(Geobacter
sulfurreducens) 		PF02080
(TrkA_C)
PF02254
(TrkA_N) 		5 TYR A 119
VAL A 178
TYR A 163
VAL A 187
ILE A 123
 None
 1.44A 4aftC-4gvlA:
0.0
4aftD-4gvlA:
0.0		 4aftC-4gvlA:
16.59
4aftD-4gvlA:
16.59