SIMILAR PATTERNS OF AMINO ACIDS FOR 4A7U_A_ALEA1001

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ofe FERREDOXIN-DEPENDENT
GLUTAMATE SYNTHASE 2

(Synechocystis
sp. PCC 6803) 		PF00310
(GATase_2)
PF01493
(GXGXG)
PF01645
(Glu_synthase)
PF04898
(Glu_syn_central) 		4 GLU A 258
LYS A 254
LYS A 245
GLU A 246
 None
 1.39A 4a7uA-1ofeA:
0.0		 4a7uA-1ofeA:
7.83
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1p1v SUPEROXIDE DISMUTASE
[CU-ZN]

(Homo sapiens) 		PF00080
(Sod_Cu) 		4 GLU A  21
LYS A  23
PRO A  28
TRP A  32
 None
 1.32A 4a7uA-1p1vA:
30.7		 4a7uA-1p1vA:
98.69
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1p1v SUPEROXIDE DISMUTASE
[CU-ZN]

(Homo sapiens) 		PF00080
(Sod_Cu) 		4 GLU A  21
PRO A  28
TRP A  32
GLU A 100
 None
 0.74A 4a7uA-1p1vA:
30.7		 4a7uA-1p1vA:
98.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1vkc PUTATIVE ACETYL
TRANSFERASE

(Pyrococcus
furiosus) 		PF00583
(Acetyltransf_1) 		4 GLU A  52
LYS A  54
TRP A 111
GLU A   9
 None
 1.18A 4a7uA-1vkcA:
0.0		 4a7uA-1vkcA:
21.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2de0 ALPHA-(1,6)-FUCOSYLT
RANSFERASE

(Homo sapiens) 		PF14604
(SH3_9) 		4 GLU X 183
PRO X 484
LYS X 185
GLU X 181
 None
 1.26A 4a7uA-2de0X:
0.0		 4a7uA-2de0X:
15.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2grv LPQW

(Mycolicibacterium
smegmatis) 		PF00496
(SBP_bac_5) 		4 GLU A 148
PRO A 104
LYS A 101
GLU A  86
 None
 1.40A 4a7uA-2grvA:
0.0		 4a7uA-2grvA:
14.58
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ln7 LPXTG-SITE
TRANSPEPTIDASE
FAMILY PROTEIN

(Bacillus
anthracis) 		PF04203
(Sortase) 		4 GLU A 138
LYS A  97
TRP A  99
GLU A  78
 None
 1.38A 4a7uA-2ln7A:
0.0		 4a7uA-2ln7A:
19.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qfq 3-PHOSPHOSHIKIMATE
1-CARBOXYVINYLTRANSF
ERASE

(Escherichia
coli) 		PF00275
(EPSP_synthase) 		4 GLU A 378
PRO A 406
LYS A   1
GLU A   2
 None
 1.45A 4a7uA-2qfqA:
undetectable		 4a7uA-2qfqA:
15.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fiu NH(3)-DEPENDENT
NAD(+) SYNTHETASE

(Francisella
tularensis) 		PF02540
(NAD_synthase) 		4 GLU A 205
PRO A 192
TRP A 233
GLU A 203
 None
POP  A4001 (-3.7A)
None
None
 1.49A 4a7uA-3fiuA:
0.0		 4a7uA-3fiuA:
18.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3iwj PUTATIVE
AMINOALDEHYDE
DEHYDROGENASE

(Pisum sativum) 		PF00171
(Aldedh) 		4 GLU A  87
PRO A  90
LYS A  88
GLU A  91
 None
 1.18A 4a7uA-3iwjA:
undetectable		 4a7uA-3iwjA:
15.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3l7o RIBOSE-5-PHOSPHATE
ISOMERASE A

(Streptococcus
mutans) 		PF06026
(Rib_5-P_isom_A) 		4 GLU A 147
PRO A 155
LYS A 150
GLU A 149
 None
 1.18A 4a7uA-3l7oA:
undetectable		 4a7uA-3l7oA:
23.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lpz GET4 (YOR164C
HOMOLOG)

(Chaetomium
thermophilum) 		PF04190
(DUF410) 		4 GLU A 149
LYS A 150
TRP A 170
GLU A 144
 None
 1.20A 4a7uA-3lpzA:
undetectable		 4a7uA-3lpzA:
19.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pgb PUTATIVE
UNCHARACTERIZED
PROTEIN

(Aspergillus
nidulans) 		PF01179
(Cu_amine_oxid)
PF09248
(DUF1965) 		4 GLU A 108
PRO A 184
TRP A 102
GLU A 183
 None
 1.42A 4a7uA-3pgbA:
undetectable		 4a7uA-3pgbA:
11.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zj1 NUCLEAR
POLYADENYLATED
RNA-BINDING PROTEIN
NAB2

(Saccharomyces
cerevisiae) 		no annotation 4 GLU A 312
PRO A 266
LYS A 309
GLU A 310
 None
 1.43A 4a7uA-3zj1A:
undetectable		 4a7uA-3zj1A:
19.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4e3a SUGAR KINASE PROTEIN

(Rhizobium etli) 		PF00294
(PfkB) 		4 PRO A 137
LYS A 164
TRP A 158
GLU A 165
 None
 1.24A 4a7uA-4e3aA:
undetectable		 4a7uA-4e3aA:
18.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fdd TRANSPORTIN-1

(Homo sapiens) 		PF03810
(IBN_N)
PF13513
(HEAT_EZ) 		4 GLU A 230
LYS A 189
PRO A 188
GLU A 228
 None
 1.34A 4a7uA-4fddA:
undetectable		 4a7uA-4fddA:
11.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k8l PROLINE RACEMASE

(Ochrobactrum
anthropi) 		PF05544
(Pro_racemase) 		4 PRO A 214
LYS A 216
TRP A  35
GLU A 215
 None
 1.40A 4a7uA-4k8lA:
undetectable		 4a7uA-4k8lA:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4mlg BETA-XYLOSIDASE

(uncultured
organism) 		PF04616
(Glyco_hydro_43) 		4 GLU A 307
PRO A   4
LYS A   2
GLU A   3
 None
 1.31A 4a7uA-4mlgA:
undetectable		 4a7uA-4mlgA:
18.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4nfy D-3-PHOSPHOGLYCERATE
DEHYDROGENASE,
PUTATIVE

(Entamoeba
histolytica) 		PF00389
(2-Hacid_dh)
PF02826
(2-Hacid_dh_C) 		4 GLU A  68
LYS A  47
LYS A  65
GLU A  62
 None
 1.45A 4a7uA-4nfyA:
undetectable		 4a7uA-4nfyA:
21.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4po6 INTERFERON
ALPHA/BETA RECEPTOR
1
NON-RECEPTOR
TYROSINE-PROTEIN
KINASE TYK2

(Homo sapiens) 		no annotation 4 GLU B 500
PRO A 506
LYS B 501
GLU A 517
 None
 1.32A 4a7uA-4po6B:
undetectable		 4a7uA-4po6B:
11.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4w8y CRISPR SYSTEM CMR
SUBUNIT CMR2

(Pyrococcus
furiosus) 		PF12469
(DUF3692) 		4 GLU A 287
LYS A 282
PRO A 278
GLU A 292
 None
 1.35A 4a7uA-4w8yA:
undetectable		 4a7uA-4w8yA:
9.99
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4xcr SUPEROXIDE DISMUTASE
[CU-ZN]

(Homo sapiens) 		PF00080
(Sod_Cu) 		4 GLU A  21
PRO A  28
LYS A  30
GLU A  70
 None
 0.67A 4a7uA-4xcrA:
16.0		 4a7uA-4xcrA:
67.97
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4xcr SUPEROXIDE DISMUTASE
[CU-ZN]

(Homo sapiens) 		PF00080
(Sod_Cu) 		4 LYS A  23
PRO A  28
LYS A  30
GLU A  70
 None
 0.74A 4a7uA-4xcrA:
16.0		 4a7uA-4xcrA:
67.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5cdh MAJOR ACID
PHOSPHATASE

(Legionella
pneumophila) 		PF00328
(His_Phos_2) 		4 GLU A 171
LYS A 175
TRP A 235
GLU A 178
 None
1PE  A 402 (-3.0A)
1PE  A 402 (-4.0A)
1PE  A 402 (-3.7A)
 1.16A 4a7uA-5cdhA:
undetectable		 4a7uA-5cdhA:
18.94
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5j0g OXIDOREDUCTASE,SUPER
OXIDE DISMUTASE
[CU-ZN]

(Homo sapiens) 		PF00080
(Sod_Cu) 		4 GLU A  39
PRO A  46
LYS A  48
GLU A  88
 None
 0.68A 4a7uA-5j0gA:
12.9		 4a7uA-5j0gA:
56.44
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5j0g OXIDOREDUCTASE,SUPER
OXIDE DISMUTASE
[CU-ZN]

(Homo sapiens) 		PF00080
(Sod_Cu) 		4 LYS A  41
PRO A  46
LYS A  48
GLU A  88
 None
 0.56A 4a7uA-5j0gA:
12.9		 4a7uA-5j0gA:
56.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jp0 BETA-GLUCOSIDASE
BOGH3B

(Bacteroides
ovatus) 		PF00933
(Glyco_hydro_3)
PF01915
(Glyco_hydro_3_C)
PF14310
(Fn3-like) 		4 GLU A 529
PRO A 442
TRP A 502
GLU A 505
 None
 1.35A 4a7uA-5jp0A:
3.6		 4a7uA-5jp0A:
12.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mdm GLYCOPROTEIN

(Chandipura
vesiculovirus) 		no annotation 4 LYS E 379
PRO E 346
LYS E 344
GLU E 345
 None
 1.28A 4a7uA-5mdmE:
undetectable		 4a7uA-5mdmE:
16.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5x0t 6H8 FAB FRAGMENT
HEAVY CHAIN

(Mus musculus) 		no annotation 4 GLU A  65
PRO A  60
LYS A  62
GLU A  61
 None
 1.28A 4a7uA-5x0tA:
3.3		 4a7uA-5x0tA:
17.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xwu LEUCINE-RICH REPEAT
AND FIBRONECTIN TYPE
III
DOMAIN-CONTAINING
PROTEIN 1

(Mus musculus) 		no annotation 4 LYS B 224
PRO B 227
TRP B 179
GLU B 203
 None
 1.40A 4a7uA-5xwuB:
undetectable		 4a7uA-5xwuB:
15.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6dd3 CYTOSOLIC PURINE
5'-NUCLEOTIDASE

(Homo sapiens) 		no annotation 4 LYS A   3
PRO A  63
LYS A  61
GLU A  64
 None
 1.26A 4a7uA-6dd3A:
undetectable		 4a7uA-6dd3A:
18.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6enz ACIDIC AMINO ACID
DECARBOXYLASE GADL1

(Mus musculus) 		no annotation 4 GLU A 146
LYS A 142
LYS A 151
GLU A 152
 None
 1.22A 4a7uA-6enzA:
undetectable		 4a7uA-6enzA:
21.62