SIMILAR PATTERNS OF AMINO ACIDS FOR 4A6N_B_T1CB392_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1en4 MANGANESE SUPEROXIDE
DISMUTASE

(Escherichia
coli) 		PF00081
(Sod_Fe_N)
PF02777
(Sod_Fe_C) 		5 ARG A  72
HIS A 146
GLY A 127
PRO A 149
GLY A 152
 None
 1.47A 4a6nB-1en4A:
undetectable		 4a6nB-1en4A:
19.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1r9j TRANSKETOLASE

(Leishmania
mexicana) 		PF00456
(Transketolase_N)
PF02779
(Transket_pyr)
PF02780
(Transketolase_C) 		5 GLN A  20
ASN A 272
GLY A 266
PRO A  27
GLY A 249
 None
 1.47A 4a6nB-1r9jA:
0.9		 4a6nB-1r9jA:
20.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2uv8 FATTY ACID SYNTHASE
SUBUNIT BETA (FAS1)

(Saccharomyces
cerevisiae) 		PF00698
(Acyl_transf_1)
PF01575
(MaoC_dehydratas)
PF08354
(DUF1729)
PF13452
(MaoC_dehydrat_N)
PF16073
(SAT) 		5 PHE G1103
ASN G1246
GLY G1104
GLY G 575
GLU G1094
 None
 1.44A 4a6nB-2uv8G:
0.0		 4a6nB-2uv8G:
10.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2wk2 CHITINASE A

(Serratia
marcescens) 		PF00704
(Glyco_hydro_18)
PF08329
(ChitinaseA_N) 		5 PHE A 316
ASN A 323
GLY A 319
GLY A 273
MET A 388
 None
None
None
None
NGT  A1565 (-3.7A)
 1.20A 4a6nB-2wk2A:
undetectable		 4a6nB-2wk2A:
22.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2y8n 4-HYDROXYPHENYLACETA
TE DECARBOXYLASE
LARGE SUBUNIT

(Clostridium
scatologenes) 		PF01228
(Gly_radical)
PF02901
(PFL-like) 		5 MET A 597
ASN A 604
GLY A 624
GLY A 222
GLU A 505
 None
 1.07A 4a6nB-2y8nA:
undetectable		 4a6nB-2y8nA:
17.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yn2 UNCHARACTERIZED
PROTEIN YNL108C

(Saccharomyces
cerevisiae) 		PF00300
(His_Phos_1) 		5 GLN A  43
HIS A  39
GLY A  40
GLY A 251
GLU A 249
 None
None
None
FMT  A1264 ( 3.7A)
None
 1.13A 4a6nB-2yn2A:
0.0		 4a6nB-2yn2A:
22.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zua NUCLEOSIDE
DIPHOSPHATE KINASE

(Haloarcula
quadrata) 		PF00334
(NDK) 		5 PHE A   8
ASN A 128
GLY A 119
GLY A  37
MET A  41
 None
 1.36A 4a6nB-2zuaA:
undetectable		 4a6nB-2zuaA:
21.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3oqn CATABOLITE CONTROL
PROTEIN A

(Bacillus
subtilis) 		PF00356
(LacI)
PF13377
(Peripla_BP_3) 		5 ASN A  93
GLY A 120
GLY A  82
GLU A  78
MET A 124
 None
 1.38A 4a6nB-3oqnA:
0.3		 4a6nB-3oqnA:
21.62
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3p9u TETX2 PROTEIN

(Bacteroides
thetaiotaomicron) 		PF01494
(FAD_binding_3) 		5 ASN A 226
HIS A 234
PRO A 318
GLY A 321
GLU A 367
 SO4  A   1 (-4.5A)
SO4  A   1 ( 4.6A)
FAD  A 401 (-4.4A)
None
None
 0.92A 4a6nB-3p9uA:
58.4		 4a6nB-3p9uA:
94.47
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3p9u TETX2 PROTEIN

(Bacteroides
thetaiotaomicron) 		PF01494
(FAD_binding_3) 		9 GLN A 192
ARG A 213
MET A 215
ASN A 226
HIS A 234
GLY A 236
PRO A 318
GLY A 321
MET A 375
 FAD  A 401 (-3.4A)
SO4  A   1 (-4.5A)
None
SO4  A   1 (-4.5A)
SO4  A   1 ( 4.6A)
None
FAD  A 401 (-4.4A)
None
None
 0.62A 4a6nB-3p9uA:
58.4		 4a6nB-3p9uA:
94.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ps9 TRNA
5-METHYLAMINOMETHYL-
2-THIOURIDINE
BIOSYNTHESIS
BIFUNCTIONAL PROTEIN
MNMC

(Escherichia
coli) 		PF01266
(DAO)
PF05430
(Methyltransf_30) 		5 GLN A   7
ASN A  10
GLY A  68
GLU A  64
MET A 188
 None
None
SAM  A 670 (-3.2A)
SAM  A 670 (-4.0A)
SAM  A 670 ( 3.9A)
 1.44A 4a6nB-3ps9A:
15.5		 4a6nB-3ps9A:
18.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qqz PUTATIVE
UNCHARACTERIZED
PROTEIN YJIK

(Escherichia
coli) 		PF06977
(SdiA-regulated) 		5 PHE A 314
ASN A 312
GLY A  87
GLY A 296
GLU A 247
 None
None
None
None
CA  A 324 (-3.1A)
 1.43A 4a6nB-3qqzA:
undetectable		 4a6nB-3qqzA:
21.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hpz DTALE2

(Xanthomonas) 		PF03377
(TAL_effector) 		5 PHE A 188
GLY A 187
GLY A 204
GLU A 239
MET A 213
 None
 1.43A 4a6nB-4hpzA:
undetectable		 4a6nB-4hpzA:
21.69
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ifa EXTRACELLULAR
PROTEIN CONTAINING A
SCP DOMAIN

(Bacillus
anthracis) 		PF00188
(CAP)
PF14504
(CAP_assoc_N) 		5 MET A  59
PHE A  99
GLY A 100
PRO A  74
GLY A  72
 None
 1.29A 4a6nB-4ifaA:
undetectable		 4a6nB-4ifaA:
26.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4jc8 HOPS COMPONENT VPS33

(Chaetomium
thermophilum) 		PF00995
(Sec1) 		5 PHE A 157
ASN A 154
PRO A 245
GLY A 643
MET A 465
 None
 1.21A 4a6nB-4jc8A:
undetectable		 4a6nB-4jc8A:
20.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k3b OUTER MEMBRANE
PROTEIN ASSEMBLY
FACTOR BAMA

(Neisseria
gonorrhoeae) 		PF01103
(Bac_surface_Ag)
PF07244
(POTRA) 		5 PHE A 565
ASN A 539
GLY A 556
PRO A 646
GLU A 598
 None
 1.39A 4a6nB-4k3bA:
undetectable		 4a6nB-4k3bA:
19.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qyj ALDEHYDE
DEHYDROGENASE

(Pseudomonas
putida) 		PF00171
(Aldedh) 		5 GLN A 299
ASN A 351
HIS A 348
GLY A 403
GLY A 378
 None
 1.41A 4a6nB-4qyjA:
undetectable		 4a6nB-4qyjA:
24.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r6l BACTERIOPHYTOCHROME
(LIGHT-REGULATED
SIGNAL TRANSDUCTION
HISTIDINE KINASE),
PHYB1

(Rhodopseudomonas
palustris) 		PF00360
(PHY)
PF01590
(GAF)
PF08446
(PAS_2) 		5 ARG A  75
PHE A  68
ASN A  74
GLY A 105
GLU A 119
 None
 1.42A 4a6nB-4r6lA:
undetectable		 4a6nB-4r6lA:
20.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4rih GLYCOSYL TRANSFERASE
HOMOLOG,GLYCOSYL
TRANSFERASE

(Streptomyces
cyanogenus;
Streptomyces
fradiae) 		PF06722
(DUF1205) 		5 MET A 116
PHE A  88
HIS A  86
GLY A  89
GLY A 306
 None
 1.31A 4a6nB-4rihA:
3.1		 4a6nB-4rihA:
21.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4z94 GELSOLIN,
TROPOMODULIN-1,
LEIOMODIN-1 CHIMERA

(Homo sapiens) 		PF00626
(Gelsolin) 		5 PHE G1422
ASN G1424
HIS G1453
GLY G1451
GLY G1430
 None
 1.33A 4a6nB-4z94G:
undetectable		 4a6nB-4z94G:
21.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5eqd UDP-GALACTOPYRANOSE
MUTASE

(Mycolicibacterium
smegmatis) 		PF03275
(GLF)
PF13450
(NAD_binding_8) 		5 MET A 378
PHE A  26
ASN A  55
GLY A  25
GLY A 212
 FAD  A 501 (-4.1A)
FAD  A 501 (-4.7A)
FAD  A 501 (-3.8A)
FAD  A 501 (-3.3A)
NO3  A 502 (-3.2A)
 1.32A 4a6nB-5eqdA:
12.0		 4a6nB-5eqdA:
23.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5fx8 LINOLEATE
11-LIPOXYGENASE

(Gaeumannomyces
avenae) 		PF00305
(Lipoxygenase) 		5 MET A 412
ASN A 572
GLY A 567
PRO A 313
GLY A 316
 None
 1.30A 4a6nB-5fx8A:
undetectable		 4a6nB-5fx8A:
22.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gpr CHITINASE

(Ostrinia
furnacalis) 		PF00704
(Glyco_hydro_18)
PF08329
(ChitinaseA_N) 		5 PHE A 309
ASN A 316
GLY A 312
GLY A 266
MET A 381
 PHE  A 309 ( 1.3A)
ASN  A 316 ( 0.6A)
GLY  A 312 ( 0.0A)
GLY  A 266 ( 0.0A)
MET  A 381 ( 0.0A)
 1.13A 4a6nB-5gprA:
undetectable		 4a6nB-5gprA:
22.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ito NOPALINE-BINDING
PERIPLASMIC PROTEIN

(Agrobacterium
fabrum) 		PF00497
(SBP_bac_3) 		5 PHE A 162
GLY A 163
GLY A 227
GLU A 149
MET A 178
 None
 1.26A 4a6nB-5itoA:
undetectable		 4a6nB-5itoA:
21.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lw3 POLY(BETA-D-MANNURON
ATE) C5 EPIMERASE 6

(Azotobacter
vinelandii) 		no annotation 5 GLN A 180
ARG A 134
ASN A 135
GLY A 183
GLY A 131
 None
 1.36A 4a6nB-5lw3A:
undetectable		 4a6nB-5lw3A:
22.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lw7 ABC TRANSPORTER
ATP-BINDING PROTEIN

(Pyrococcus
abyssi) 		PF00005
(ABC_tran)
PF00037
(Fer4)
PF04068
(RLI) 		5 GLN B 410
ARG B 210
GLY B 217
GLY B 536
GLU B 534
 None
 0.91A 4a6nB-5lw7B:
undetectable		 4a6nB-5lw7B:
20.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xgv PYRE3

(Streptomyces
rugosporus) 		no annotation 5 GLN A  56
ARG A 322
ASN A 297
GLY A 440
GLY A 289
 None
 1.32A 4a6nB-5xgvA:
26.9		 4a6nB-5xgvA:
14.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5y3r DNA-DEPENDENT
PROTEIN KINASE
CATALYTIC SUBUNIT

(Homo sapiens) 		PF00454
(PI3_PI4_kinase)
PF02259
(FAT)
PF02260
(FATC)
PF08163
(NUC194) 		5 GLN C3564
ARG C3696
ASN C3697
GLY C3565
MET C3796
 None
 1.44A 4a6nB-5y3rC:
undetectable		 4a6nB-5y3rC:
7.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5zl9 CHITINASE AB

(Serratia
marcescens) 		no annotation 5 PHE A 316
ASN A 323
GLY A 319
GLY A 273
MET A 390
 None
None
None
None
GOL  A 706 (-3.3A)
 1.12A 4a6nB-5zl9A:
undetectable		 4a6nB-5zl9A:
12.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6apg DISD PROTEIN

(Sorangium
cellulosum) 		no annotation 5 GLN A  12
ARG A 111
GLY A  10
GLY A 116
MET A 123
 None
MLI  A 301 (-3.3A)
None
None
MLI  A 301 ( 4.4A)
 1.37A 4a6nB-6apgA:
undetectable		 4a6nB-6apgA:
12.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6cfw MEMBRANE-BOUND
HYDROGENASE SUBUNIT
ALPHA
MEMBRANE-BOUND
HYDROGENASE SUBUNIT
BETA

(Pyrococcus
furiosus) 		no annotation 5 ARG L  54
GLY L  47
PRO K 146
GLY K 153
GLU K 151
 None
 1.25A 4a6nB-6cfwL:
undetectable		 4a6nB-6cfwL:
10.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6etz BETA-GALACTOSIDASE

(Arthrobacter
sp. 32cB) 		no annotation 5 HIS A 131
GLY A 213
PRO A 127
GLY A  71
GLU A 124
 None
 1.20A 4a6nB-6etzA:
undetectable		 4a6nB-6etzA:
11.72