SIMILAR PATTERNS OF AMINO ACIDS FOR 3WQV_A_GCSA502

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2voy SARCOPLASMIC/ENDOPLA
SMIC RETICULUM
CALCIUM ATPASE 1

(Oryctolagus
cuniculus) 		PF00690
(Cation_ATPase_N)
no annotation 		4 TRP C 967
GLY D 850
TRP D 854
ALA B  76
 None
 1.41A 3wqvA-2voyC:
undetectable		 3wqvA-2voyC:
4.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a1f CYTOCHROME B-245
HEAVY CHAIN

(Homo sapiens) 		PF08030
(NAD_binding_6) 		4 TRP A 132
GLY A  24
TRP A  59
ALA A  25
 None
 1.32A 3wqvA-3a1fA:
undetectable		 3wqvA-3a1fA:
20.39
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3w4r CHITINASE

(Ostrinia
furnacalis) 		PF00704
(Glyco_hydro_18) 		4 TRP A  34
GLY A 106
TRP A 107
ALA A 108
 None
 0.19A 3wqvA-3w4rA:
47.5		 3wqvA-3w4rA:
72.76
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3wl1 CHITINASE

(Ostrinia
furnacalis) 		PF00704
(Glyco_hydro_18) 		4 TRP A  34
GLY A 106
TRP A 107
ALA A 108
 NAG  A 503 ( 4.0A)
NAG  A 501 (-3.6A)
NAG  A 505 ( 3.4A)
NAG  A 502 (-3.4A)
 0.17A 3wqvA-3wl1A:
47.8		 3wqvA-3wl1A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zdn MONOAMINE OXIDASE N

(Aspergillus
niger) 		PF01593
(Amino_oxidase) 		4 TRP A 463
GLY A 235
TRP A 231
ALA A 232
 None
 1.41A 3wqvA-3zdnA:
undetectable		 3wqvA-3zdnA:
21.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4txg CHITINASE

(Chromobacterium
violaceum) 		PF00704
(Glyco_hydro_18)
PF06483
(ChiC) 		4 TRP A 163
GLY A 254
TRP A 255
ALA A 256
 None
 0.54A 3wqvA-4txgA:
34.7		 3wqvA-4txgA:
22.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wvg CHITINASE

(Ostrinia
furnacalis) 		no annotation 4 TRP A 538
GLY A 605
TRP A 606
ALA A 607
 NAG  A1001 (-4.0A)
NAG  A1003 (-3.5A)
NAG  A1004 (-3.4A)
NAG  A1002 (-3.3A)
 0.43A 3wqvA-5wvgA:
54.3		 3wqvA-5wvgA:
14.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5z9s GLYCOSYL HYDROLASE
FAMILY 3 PROTEIN

(Bifidobacterium
longum) 		no annotation 4 TRP A 594
GLY A 165
TRP A 120
ALA A 117
 None
 1.32A 3wqvA-5z9sA:
1.0		 3wqvA-5z9sA:
14.04