SIMILAR PATTERNS OF AMINO ACIDS FOR 3W9T_A_W9TA1012

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1vcl HEMOLYTIC LECTIN
CEL-III

(Cucumaria
echinata) 		PF00652
(Ricin_B_lectin) 		4 ASP A 256
GLY A 259
TRP A 269
ASP A 272
 CA  A1005 (-2.7A)
CA  A1005 (-4.3A)
None
CA  A1005 ( 4.8A)
 0.48A 3w9tA-1vclA:
36.9		 3w9tA-1vclA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ecq ENDO-ALPHA-N-ACETYLG
ALACTOSAMINIDASE

(Streptococcus
pneumoniae) 		PF12905
(Glyco_hydro_101)
PF17451
(Glyco_hyd_101C) 		4 ASP A 585
GLY A 589
TRP A 586
ASP A 468
 CA  A2000 ( 4.6A)
None
None
None
 1.21A 3w9tA-3ecqA:
0.0		 3w9tA-3ecqA:
14.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vta CUCUMISIN

(Cucumis melo) 		PF00082
(Peptidase_S8) 		4 ASP A 254
GLY A 187
TRP A 246
ASP A 248
 None
 1.50A 3w9tA-3vtaA:
0.0		 3w9tA-3vtaA:
20.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xjy ATP-BINDING CASSETTE
SUB-FAMILY A MEMBER
1

(Homo sapiens) 		PF00005
(ABC_tran)
PF12698
(ABC2_membrane_3) 		4 ASP A 575
GLY A 577
TRP A 574
ASP A 571
 None
 1.18A 3w9tA-5xjyA:
0.0		 3w9tA-5xjyA:
11.25