SIMILAR PATTERNS OF AMINO ACIDS FOR 3V8V_B_SAMB802_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1g60 ADENINE-SPECIFIC
METHYLTRANSFERASE
MBOIIA

(Moraxella bovis) 		PF01555
(N6_N4_Mtase) 		6 PHE A 220
MET A 242
TYR A 246
CYH A  12
ASP A  30
PRO A  32
 SAM  A 500 (-4.6A)
SAM  A 500 (-3.6A)
SAM  A 500 (-4.4A)
SAM  A 500 (-3.4A)
SAM  A 500 (-3.7A)
None
 1.34A 3v8vB-1g60A:
5.1		 3v8vB-1g60A:
16.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wxx HYPOTHETICAL PROTEIN
TTHA1280

(Thermus
thermophilus) 		PF10672
(Methyltrans_SAM) 		5 ARG A 202
PHE A 217
SER A 240
ASP A 286
PRO A 288
 None
 0.65A 3v8vB-1wxxA:
24.8		 3v8vB-1wxxA:
21.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2as0 HYPOTHETICAL PROTEIN
PH1915

(Pyrococcus
horikoshii) 		PF01472
(PUA)
PF10672
(Methyltrans_SAM) 		6 ARG A 208
PHE A 225
TYR A 227
SER A 249
ASP A 296
PRO A 298
 None
 0.66A 3v8vB-2as0A:
22.3		 3v8vB-2as0A:
21.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2igt SAM DEPENDENT
METHYLTRANSFERASE

(Agrobacterium
fabrum) 		PF10672
(Methyltrans_SAM) 		6 PHE A 140
TYR A 142
SER A 163
ASP A 190
ASP A 211
PRO A 213
 SAM  A1001 (-4.4A)
FMT  A1013 ( 4.7A)
ACY  A1008 ( 2.6A)
SAM  A1001 (-3.7A)
SAM  A1001 (-2.8A)
SAM  A1001 (-3.2A)
 0.76A 3v8vB-2igtA:
20.6		 3v8vB-2igtA:
18.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3c0k UPF0064 PROTEIN YCCW

(Escherichia
coli) 		PF10672
(Methyltrans_SAM) 		5 ARG A 212
PHE A 228
TYR A 230
ASP A 279
ASP A 300
 None
 1.05A 3v8vB-3c0kA:
27.3		 3v8vB-3c0kA:
21.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3c0k UPF0064 PROTEIN YCCW

(Escherichia
coli) 		PF10672
(Methyltrans_SAM) 		5 ARG A 212
PHE A 228
TYR A 230
SER A 252
ASP A 279
 None
 0.45A 3v8vB-3c0kA:
27.3		 3v8vB-3c0kA:
21.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kdj PROTEIN PHOSPHATASE
2C 56

(Arabidopsis
thaliana) 		PF00481
(PP2C) 		5 ARG B 409
SER B 397
TYR B 401
ASP B 421
CYH B 341
 None
 1.43A 3v8vB-3kdjB:
undetectable		 3v8vB-3kdjB:
19.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ldf PUTATIVE
UNCHARACTERIZED
PROTEIN SMU.776

(Streptococcus
mutans) 		PF10672
(Methyltrans_SAM) 		6 ARG A 203
PHE A 220
TYR A 222
ASP A 271
ASP A 292
PRO A 294
 None
SAH  A 401 (-4.6A)
SAH  A 401 (-4.8A)
SAH  A 401 (-3.2A)
SAH  A 401 (-3.5A)
SAH  A 401 ( 4.0A)
 0.54A 3v8vB-3ldfA:
29.0		 3v8vB-3ldfA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rd8 FUMARATE HYDRATASE
CLASS II

(Mycolicibacterium
smegmatis) 		PF00206
(Lyase_1)
PF10415
(FumaraseC_C) 		5 PHE A 239
SER A 262
SER A 136
CYH A  59
PRO A 236
 None
 1.37A 3v8vB-3rd8A:
0.0		 3v8vB-3rd8A:
23.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3rrp PROBABLE FUMARATE
HYDRATASE FUM

(Mycobacteroides
abscessus) 		PF00206
(Lyase_1)
PF10415
(FumaraseC_C) 		5 PHE A 240
SER A 263
SER A 137
CYH A  58
PRO A 237
 None
None
LMR  A 468 (-2.7A)
None
None
 1.39A 3v8vB-3rrpA:
undetectable		 3v8vB-3rrpA:
21.69
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3v8v RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE L

(Escherichia
coli) 		PF01170
(UPF0020)
PF02926
(THUMP)
PF10672
(Methyltrans_SAM) 		6 ARG A 530
PHE A 546
SER A 551
ASP A 597
CYH A 598
PRO A 616
 None
SAM  A 802 (-4.5A)
None
SAM  A 802 (-3.5A)
SAM  A 802 (-3.3A)
None
 1.43A 3v8vB-3v8vA:
51.5		 3v8vB-3v8vA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3v8v RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE L

(Escherichia
coli) 		PF01170
(UPF0020)
PF02926
(THUMP)
PF10672
(Methyltrans_SAM) 		11 ARG A 530
PHE A 546
TYR A 548
SER A 551
MET A 569
SER A 570
TYR A 573
ASP A 597
CYH A 598
ASP A 615
PRO A 617
 None
SAM  A 802 (-4.5A)
SAM  A 802 (-4.7A)
None
SAM  A 802 (-3.2A)
None
SAM  A 802 (-4.6A)
SAM  A 802 (-3.5A)
SAM  A 802 (-3.3A)
None
SAM  A 802 ( 4.6A)
 0.30A 3v8vB-3v8vA:
51.5		 3v8vB-3v8vA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3v8v RIBOSOMAL RNA LARGE
SUBUNIT
METHYLTRANSFERASE L

(Escherichia
coli) 		PF01170
(UPF0020)
PF02926
(THUMP)
PF10672
(Methyltrans_SAM) 		5 PHE A 546
TYR A 548
ASP A 597
CYH A 598
PRO A 617
 SAM  A 802 (-4.5A)
SAM  A 802 (-4.7A)
SAM  A 802 (-3.5A)
SAM  A 802 (-3.3A)
SAM  A 802 ( 4.6A)
 1.10A 3v8vB-3v8vA:
51.5		 3v8vB-3v8vA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vse PUTATIVE
UNCHARACTERIZED
PROTEIN

(Staphylococcus
aureus) 		PF10672
(Methyltrans_SAM) 		6 ARG A 205
PHE A 222
TYR A 224
ASP A 272
ASP A 293
PRO A 295
 None
SAH  A 401 (-4.3A)
SAH  A 401 (-4.8A)
SAH  A 401 (-3.0A)
SAH  A 401 (-3.2A)
SAH  A 401 ( 4.2A)
 0.37A 3v8vB-3vseA:
31.3		 3v8vB-3vseA:
20.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4apb FUMARATE HYDRATASE
CLASS II

(Mycobacterium
tuberculosis) 		PF00206
(Lyase_1)
PF10415
(FumaraseC_C) 		5 PHE A 241
SER A 264
SER A 138
CYH A  61
PRO A 238
 None
 1.42A 3v8vB-4apbA:
undetectable		 3v8vB-4apbA:
21.79
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gij PSEUDOURIDINE-5'-PHO
SPHATE GLYCOSIDASE

(Escherichia
coli) 		PF04227
(Indigoidine_A) 		5 PHE A 203
SER A 167
ASP A 170
ASP A 204
PRO A 202
 None
 1.46A 3v8vB-4gijA:
undetectable		 3v8vB-4gijA:
19.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ho4 GLUCOSE-1-PHOSPHATE
THYMIDYLYLTRANSFERAS
E

(Aneurinibacillus
thermoaerophilus) 		PF00483
(NTP_transferase) 		5 SER A 167
TYR A 135
ASP A 108
ASP A 139
SER A 229
 None
None
THM  A 302 (-3.5A)
None
None
 1.21A 3v8vB-4ho4A:
undetectable		 3v8vB-4ho4A:
18.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wem ANTI-F4+ETEC
BACTERIA VHH
VARIABLE REGION

(Lama glama) 		PF07686
(V-set) 		5 ARG B 819
SER B 821
SER B 825
ASP B 829
ASP B 872
 None
 1.36A 3v8vB-4wemB:
undetectable		 3v8vB-4wemB:
10.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5oc1 ARYL-ALCOHOL OXIDASE

(Pleurotus
eryngii) 		no annotation 5 SER A 197
SER A 411
ASP A 166
PRO A 164
SER A 324
 None
 1.43A 3v8vB-5oc1A:
1.1		 3v8vB-5oc1A:
22.76