SIMILAR PATTERNS OF AMINO ACIDS FOR 3TEH_A_DAHA351_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2amc PHENYLALANYL-TRNA
SYNTHETASE ALPHA
CHAIN

(Thermus
thermophilus) 		PF01409
(tRNA-synt_2d) 		5 TRP A 149
ARG A 204
VAL A 261
ALA A 314
GLY A 282
 TYR  A 888 (-4.1A)
TYR  A 888 (-3.9A)
TYR  A 888 (-4.7A)
TYR  A 888 (-3.4A)
TYR  A 888 ( 4.0A)
 1.45A 3tehA-2amcA:
42.2		 3tehA-2amcA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2amc PHENYLALANYL-TRNA
SYNTHETASE ALPHA
CHAIN

(Thermus
thermophilus) 		PF01409
(tRNA-synt_2d) 		9 TRP A 149
HIS A 178
SER A 180
ARG A 204
GLN A 218
GLU A 220
VAL A 261
ALA A 314
GLY A 316
 TYR  A 888 (-4.1A)
TYR  A 888 (-3.7A)
TYR  A 888 (-2.7A)
TYR  A 888 (-3.9A)
TYR  A 888 (-3.3A)
TYR  A 888 (-3.5A)
TYR  A 888 (-4.7A)
TYR  A 888 (-3.4A)
TYR  A 888 (-3.6A)
 0.48A 3tehA-2amcA:
42.2		 3tehA-2amcA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2rhq PHENYLALANYL-TRNA
SYNTHETASE ALPHA
CHAIN

(Staphylococcus
haemolyticus) 		PF01409
(tRNA-synt_2d) 		5 HIS A 172
SER A 174
GLN A 214
ALA A 311
GLY A 313
 None
GAX  A 352 (-2.8A)
GAX  A 352 (-4.2A)
GAX  A 352 (-3.4A)
GAX  A 352 (-3.2A)
 0.71A 3tehA-2rhqA:
28.4		 3tehA-2rhqA:
36.46
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2rhq PHENYLALANYL-TRNA
SYNTHETASE ALPHA
CHAIN

(Staphylococcus
haemolyticus) 		PF01409
(tRNA-synt_2d) 		5 HIS A 172
SER A 174
GLU A 216
ALA A 311
GLY A 313
 None
GAX  A 352 (-2.8A)
GAX  A 352 (-3.7A)
GAX  A 352 (-3.4A)
GAX  A 352 (-3.2A)
 0.79A 3tehA-2rhqA:
28.4		 3tehA-2rhqA:
36.46
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2rhq PHENYLALANYL-TRNA
SYNTHETASE ALPHA
CHAIN

(Staphylococcus
haemolyticus) 		PF01409
(tRNA-synt_2d) 		5 HIS A 172
SER A 174
GLU A 216
VAL A 292
ALA A 311
 None
GAX  A 352 (-2.8A)
GAX  A 352 (-3.7A)
GAX  A 352 ( 4.5A)
GAX  A 352 (-3.4A)
 1.36A 3tehA-2rhqA:
28.4		 3tehA-2rhqA:
36.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3l4g PHENYLALANYL-TRNA
SYNTHETASE ALPHA
CHAIN

(Homo sapiens) 		PF01409
(tRNA-synt_2d) 		6 HIS A 327
ARG A 358
GLN A 372
GLU A 374
ALA A 456
GLY A 458
 None
None
PHE  A 509 (-3.4A)
PHE  A 509 (-3.6A)
PHE  A 509 ( 4.1A)
PHE  A 509 (-3.6A)
 0.97A 3tehA-3l4gA:
22.8		 3tehA-3l4gA:
27.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3m8y PHOSPHOPENTOMUTASE

(Bacillus cereus) 		PF01676
(Metalloenzyme) 		5 HIS A 334
SER A  31
ARG A 293
GLU A 342
GLY A 329
 MN  A 397 (-3.4A)
None
None
None
None
 1.27A 3tehA-3m8yA:
0.1		 3tehA-3m8yA:
22.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mal STROMAL CELL-DERIVED
FACTOR 2-LIKE
PROTEIN

(Arabidopsis
thaliana) 		PF02815
(MIR) 		5 HIS A 177
SER A 176
GLN A 189
VAL A 131
GLY A  72
 None
 1.48A 3tehA-3malA:
undetectable		 3tehA-3malA:
19.77
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3pco PHENYLALANYL-TRNA
SYNTHETASE, ALPHA
SUBUNIT

(Escherichia
coli) 		PF01409
(tRNA-synt_2d)
PF02912
(Phe_tRNA-synt_N) 		6 SER A 171
ARG A 195
GLN A 208
GLU A 210
ALA A 294
GLY A 296
 PHE  A 980 (-3.5A)
AMP  A 992 (-4.0A)
PHE  A 980 ( 3.6A)
PHE  A 980 (-3.0A)
PHE  A 980 ( 4.0A)
PHE  A 980 (-3.6A)
 0.58A 3tehA-3pcoA:
28.6		 3tehA-3pcoA:
45.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bin N-ACETYLMURAMOYL-L-A
LANINE AMIDASE AMIC

(Escherichia
coli) 		PF01520
(Amidase_3)
PF11741
(AMIN) 		5 HIS A 265
ARG A 249
GLU A 211
ALA A 268
GLY A 202
 ZN  A 500 (-3.3A)
None
ZN  A 500 (-2.2A)
None
None
 1.47A 3tehA-4binA:
0.6		 3tehA-4binA:
23.67
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4p74 PHENYLALANINE--TRNA
LIGASE ALPHA SUBUNIT

(Pseudomonas
aeruginosa) 		PF01409
(tRNA-synt_2d) 		7 HIS C  90
SER C  92
ARG C 116
GLN C 129
GLU C 131
ALA C 226
GLY C 228
 None
2U9  C 301 (-3.6A)
2U9  C 301 ( 4.2A)
2U9  C 301 (-3.6A)
2U9  C 301 (-3.4A)
2U9  C 301 (-3.3A)
2U9  C 301 (-3.6A)
 0.92A 3tehA-4p74C:
28.7		 3tehA-4p74C:
47.27
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4p74 PHENYLALANINE--TRNA
LIGASE ALPHA SUBUNIT

(Pseudomonas
aeruginosa) 		PF01409
(tRNA-synt_2d) 		5 HIS C  90
SER C  92
GLU C 131
VAL C 207
ALA C 226
 None
2U9  C 301 (-3.6A)
2U9  C 301 (-3.4A)
2U9  C 301 ( 4.6A)
2U9  C 301 (-3.3A)
 1.48A 3tehA-4p74C:
28.7		 3tehA-4p74C:
47.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mgv PHENYLALANINE--TRNA
LIGASE,
MITOCHONDRIAL

(Homo sapiens) 		PF01409
(tRNA-synt_2d)
PF03147
(FDX-ACB) 		7 HIS A 119
SER A 121
ARG A 143
GLN A 157
GLU A 159
ALA A 275
GLY A 277
 None
 0.57A 3tehA-5mgvA:
23.2		 3tehA-5mgvA:
23.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5oy9 GLYCOPROTEIN G

(Indiana
vesiculovirus) 		no annotation 5 SER A 266
GLN A 264
VAL A 235
ALA A 261
GLY A 311
 None
 1.37A 3tehA-5oy9A:
undetectable		 3tehA-5oy9A:
10.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vld HISTIDINOL
DEHYDROGENASE,
CHLOROPLASTIC

(Medicago
truncatula) 		PF00815
(Histidinol_dh) 		5 HIS A 302
SER A 277
VAL A 409
ALA A 274
GLY A 250
 NAD  A 502 (-3.9A)
HIS  A 501 ( 2.6A)
NAD  A 502 (-3.4A)
NAD  A 502 (-3.7A)
NAD  A 502 (-3.0A)
 1.10A 3tehA-5vldA:
undetectable		 3tehA-5vldA:
20.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wwt PUTATIVE
METHYLTRANSFERASE
NSUN6

(Homo sapiens) 		PF01189
(Methyltr_RsmB-F) 		5 HIS A 251
SER A 227
GLN A 219
VAL A 262
GLY A 247
 None
 1.44A 3tehA-5wwtA:
undetectable		 3tehA-5wwtA:
21.22