SIMILAR PATTERNS OF AMINO ACIDS FOR 3SUD_D_SUED1201_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1g8x MYOSIN II HEAVY
CHAIN FUSED TO
ALPHA-ACTININ 3

(Dictyostelium
discoideum) 		PF00063
(Myosin_head)
PF00435
(Spectrin)
PF02736
(Myosin_N) 		4 PHE A 103
TYR A 110
LEU A  97
ARG A 109
 None
 1.00A 3sudD-1g8xA:
0.0		 3sudD-1g8xA:
11.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ioo SF11-RNASE

(Nicotiana alata) 		PF00445
(Ribonuclease_T2) 		4 PHE A  29
TYR A 164
LEU A 111
LYS A 112
 None
None
None
NAG  A 197 (-2.9A)
 1.09A 3sudD-1iooA:
0.0		 3sudD-1iooA:
19.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jx2 MYOSIN-2 HEAVY
CHAIN,DYNAMIN-A

(Dictyostelium
discoideum) 		PF00063
(Myosin_head)
PF02736
(Myosin_N) 		4 PHE A 114
TYR A 121
LEU A 108
ARG A 120
 None
 0.82A 3sudD-1jx2A:
0.0		 3sudD-1jx2A:
10.86
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cw7 ENDONUCLEASE
PI-PKOII

(Thermococcus
kodakarensis) 		PF14528
(LAGLIDADG_3)
PF14890
(Intein_splicing) 		4 PHE A 380
LEU A 282
LYS A 280
ARG A 372
 None
 1.49A 3sudD-2cw7A:
0.0		 3sudD-2cw7A:
15.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2im5 NICOTINATE
PHOSPHORIBOSYLTRANSF
ERASE

(Porphyromonas
gingivalis) 		PF04095
(NAPRTase) 		4 PHE A 171
TYR A 131
LEU A 334
ARG A 169
 None
 1.27A 3sudD-2im5A:
undetectable		 3sudD-2im5A:
20.87
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2izw RYEGRASS MOTTLE
VIRUS COAT PROTEIN

(Ryegrass mottle
virus) 		PF00729
(Viral_coat) 		4 PHE A  90
TYR A 115
LEU A 183
ARG A 112
 None
 1.30A 3sudD-2izwA:
0.0		 3sudD-2izwA:
28.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2mun MU-SCOLOPTOXIN-SSM6A

(Scolopendra
mutilans) 		no annotation 4 TYR A  29
LEU A  44
LYS A  40
ARG A  19
 None
 1.33A 3sudD-2munA:
undetectable		 3sudD-2munA:
12.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2o1t ENDOPLASMIN

(Canis lupus) 		PF00183
(HSP90) 		4 PHE A 718
TYR A 727
LEU A 693
ARG A 724
 None
 1.18A 3sudD-2o1tA:
undetectable		 3sudD-2o1tA:
18.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2o1v ENDOPLASMIN

(Canis lupus) 		PF00183
(HSP90)
PF02518
(HATPase_c) 		4 PHE A 718
TYR A 727
LEU A 693
ARG A 724
 None
 1.26A 3sudD-2o1vA:
0.0		 3sudD-2o1vA:
15.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2y9e MYOSIN-2

(Dictyostelium
discoideum) 		PF00063
(Myosin_head)
PF02736
(Myosin_N) 		4 PHE X 103
TYR X 110
LEU X  97
ARG X 109
 None
 1.09A 3sudD-2y9eX:
2.1		 3sudD-2y9eX:
14.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yne GLYCYLPEPTIDE
N-TETRADECANOYLTRANS
FERASE

(Plasmodium
vivax) 		PF01233
(NMT)
PF02799
(NMT_C) 		4 PHE A 140
TYR A 107
LEU A 169
ARG A 104
 None
 1.19A 3sudD-2yneA:
undetectable		 3sudD-2yneA:
17.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a27 UNCHARACTERIZED
PROTEIN MJ1557

(Methanocaldococcus
jannaschii) 		PF02475
(Met_10) 		4 PHE A 183
LEU A 160
LYS A 161
ARG A 156
 None
None
None
SAM  A 250 ( 4.7A)
 1.16A 3sudD-3a27A:
undetectable		 3sudD-3a27A:
22.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3iu1 GLYCYLPEPTIDE
N-TETRADECANOYLTRANS
FERASE 1

(Homo sapiens) 		PF01233
(NMT)
PF02799
(NMT_C) 		4 PHE A 225
TYR A 192
LEU A 254
ARG A 189
 None
 1.27A 3sudD-3iu1A:
undetectable		 3sudD-3iu1A:
18.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k85 D-GLYCERO-D-MANNO-HE
PTOSE 1-PHOSPHATE
KINASE

(Bacteroides
thetaiotaomicron) 		PF00288
(GHMP_kinases_N)
PF08544
(GHMP_kinases_C) 		4 TYR A 161
LEU A 245
LYS A 242
ARG A  10
 None
 1.10A 3sudD-3k85A:
undetectable		 3sudD-3k85A:
21.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mdo PUTATIVE
PHOSPHORIBOSYLFORMYL
GLYCINAMIDINE
CYCLO-LIGASE

(Parabacteroides
distasonis) 		PF02769
(AIRS_C) 		4 TYR A  65
LEU A 242
LYS A 243
ARG A 212
 None
None
PEG  A 400 (-3.0A)
None
 1.38A 3sudD-3mdoA:
undetectable		 3sudD-3mdoA:
19.17
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qs1 PLASMEPSIN-1

(Plasmodium
falciparum) 		PF00026
(Asp) 		4 PHE A 174
LEU A 324
LYS A 326
ARG A 307
 None
 1.42A 3sudD-3qs1A:
1.3		 3sudD-3qs1A:
21.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wmt PROBABLE FERULOYL
ESTERASE B-1

(Aspergillus
oryzae) 		PF07519
(Tannase) 		4 PHE A 220
TYR A 194
LEU A 410
ARG A 117
 None
 1.24A 3sudD-3wmtA:
0.6		 3sudD-3wmtA:
17.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4c00 TRANSLOCATION AND
ASSEMBLY MODULE TAMA

(Escherichia
coli) 		PF01103
(Bac_surface_Ag)
PF07244
(POTRA)
PF17243
(POTRA_TamA_1) 		4 PHE A 429
TYR A 415
LEU A 499
LYS A 498
 None
 1.39A 3sudD-4c00A:
undetectable		 3sudD-4c00A:
19.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4c2x GLYCYLPEPTIDE
N-TETRADECANOYLTRANS
FERASE 2

(Homo sapiens) 		PF01233
(NMT)
PF02799
(NMT_C) 		4 PHE A 225
TYR A 192
LEU A 254
ARG A 189
 None
 1.35A 3sudD-4c2xA:
undetectable		 3sudD-4c2xA:
18.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cgn GLYCYLPEPTIDE
N-TETRADECANOYLTRANS
FERASE

(Leishmania
major) 		PF01233
(NMT)
PF02799
(NMT_C) 		4 PHE A 125
TYR A  92
LEU A 175
ARG A  89
 None
 1.20A 3sudD-4cgnA:
undetectable		 3sudD-4cgnA:
18.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4eqf PEX5-RELATED PROTEIN

(Mus musculus) 		PF13181
(TPR_8)
PF13432
(TPR_16) 		4 PHE A 258
TYR A 251
LEU A 312
ARG A 252
 None
 1.32A 3sudD-4eqfA:
undetectable		 3sudD-4eqfA:
20.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4etm LOW MOLECULAR WEIGHT
PROTEIN-TYROSINE-PHO
SPHATASE YFKJ

(Bacillus
subtilis) 		PF01451
(LMWPc) 		4 PHE A   6
TYR A 114
LEU A   9
ARG A 110
 None
None
PO4  A 201 (-4.2A)
None
 1.17A 3sudD-4etmA:
undetectable		 3sudD-4etmA:
21.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4gyo RESPONSE REGULATOR
ASPARTATE
PHOSPHATASE J

(Bacillus
subtilis) 		PF13424
(TPR_12) 		4 PHE A 101
TYR A 108
LEU A  96
ARG A  59
 None
 1.35A 3sudD-4gyoA:
undetectable		 3sudD-4gyoA:
18.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4i9c RESPONSE REGULATOR
ASPARTATE
PHOSPHATASE F

(Bacillus
subtilis) 		PF12895
(ANAPC3)
PF13424
(TPR_12) 		4 PHE A 103
TYR A 110
LEU A  98
ARG A  59
 None
 1.47A 3sudD-4i9cA:
undetectable		 3sudD-4i9cA:
17.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4irt UNCHARACTERIZED
PROTEIN

(Bacteroides
ovatus) 		PF15892
(BNR_4) 		4 PHE A 156
TYR A 173
LEU A 187
ARG A 172
 None
 1.32A 3sudD-4irtA:
undetectable		 3sudD-4irtA:
21.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4it1 PUTATIVE GLUCARATE
DEHYDRATASE

(Pseudomonas
fluorescens) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		4 PHE A 187
TYR A 350
LEU A 192
LYS A 191
 None
 1.43A 3sudD-4it1A:
undetectable		 3sudD-4it1A:
19.13
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4nwk HCV NS3 1A PROTEASE

(Hepacivirus C) 		PF02907
(Peptidase_S29) 		4 PHE A  43
TYR A  56
LEU A 135
ARG A 155
 2R8  A 301 (-4.6A)
None
2R8  A 301 (-4.4A)
2R8  A 301 (-3.6A)
 0.55A 3sudD-4nwkA:
34.4		 3sudD-4nwkA:
98.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ozt ECDYSONE RECEPTOR

(Pediculus
humanus) 		PF00104
(Hormone_recep) 		4 PHE E 345
TYR E 429
LEU E 337
ARG E 379
 None
 1.41A 3sudD-4oztE:
undetectable		 3sudD-4oztE:
18.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4uph SULFATASE (SULFURIC
ESTER HYDROLASE)
PROTEIN

(Agrobacterium
tumefaciens) 		PF00884
(Sulfatase)
PF16347
(DUF4976) 		4 TYR A 480
LEU A 492
LYS A 490
ARG A 484
 None
 0.91A 3sudD-4uphA:
undetectable		 3sudD-4uphA:
17.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4w7s PRE-MRNA-SPLICING
ATP-DEPENDENT RNA
HELICASE PRP28

(Saccharomyces
cerevisiae) 		PF00270
(DEAD)
PF00271
(Helicase_C) 		4 PHE A 217
LEU A 229
LYS A 227
ARG A 202
 None
None
None
P6G  A 604 (-3.6A)
 1.48A 3sudD-4w7sA:
undetectable		 3sudD-4w7sA:
17.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4yg8 CHITIN BIOSYNTHESIS
PROTEIN CHS5
CHITIN BIOSYNTHESIS
PROTEIN CHS6

(Saccharomyces
cerevisiae) 		PF00533
(BRCT)
PF09295
(ChAPs)
PF16893
(fn3_2) 		4 TYR B 353
LEU A  71
LYS A  69
ARG B 350
 None
 1.47A 3sudD-4yg8B:
undetectable		 3sudD-4yg8B:
13.75
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5eqq NS3 PROTEASE

(Hepacivirus C) 		PF02907
(Peptidase_S29) 		5 PHE A1043
TYR A1056
LEU A1135
LYS A1136
ARG A1155
 5RS  A1203 (-4.3A)
SO4  A1201 ( 4.5A)
5RS  A1203 (-4.2A)
5RS  A1203 (-4.8A)
5RS  A1203 (-4.8A)
 0.31A 3sudD-5eqqA:
34.5		 3sudD-5eqqA:
94.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hs1 LANOSTEROL 14-ALPHA
DEMETHYLASE

(Saccharomyces
cerevisiae) 		PF00067
(p450) 		4 PHE A 111
TYR A 404
LEU A 117
LYS A 116
 None
 1.20A 3sudD-5hs1A:
undetectable		 3sudD-5hs1A:
16.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mul NEURAMINIDASE

(Bacteroides
thetaiotaomicron) 		PF15892
(BNR_4) 		4 PHE A 156
TYR A 173
LEU A 187
ARG A 172
 None
 1.43A 3sudD-5mulA:
undetectable		 3sudD-5mulA:
20.37
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ty7 PENICILLIN-BINDING
PROTEIN 4

(Staphylococcus
aureus) 		no annotation 4 PHE A 243
TYR A 239
LEU A 258
LYS A 259
 None
None
None
NFF  A 401 ( 4.8A)
 1.49A 3sudD-5ty7A:
undetectable		 3sudD-5ty7A:
16.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5w6l RTX
REPEAT-CONTAINING
CYTOTOXIN

(Vibrio
vulnificus) 		no annotation 4 TYR A3786
LEU A3958
LYS A3959
ARG A3933
 TYR  A3786 ( 1.3A)
LEU  A3958 ( 0.6A)
LYS  A3959 ( 0.0A)
ARG  A3933 ( 0.6A)
 1.36A 3sudD-5w6lA:
undetectable		 3sudD-5w6lA:
19.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6au6 GUANINE
NUCLEOTIDE-BINDING
PROTEIN G(S) SUBUNIT
ALPHA ISOFORMS SHORT

(Homo sapiens) 		no annotation 4 PHE A 290
TYR A 360
LEU A 297
ARG A 342
 None
 1.48A 3sudD-6au6A:
undetectable		 3sudD-6au6A:
18.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6ax2 MU-HEXATOXIN-MG2A

(Macrothele
gigas) 		no annotation 4 TYR A  25
LEU A  15
LYS A  16
ARG A  35
 None
 1.31A 3sudD-6ax2A:
undetectable		 3sudD-6ax2A:
13.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6f91 PUTATIVE
ALPHA-1,2-MANNOSIDAS
E

(Bacteroides
thetaiotaomicron) 		no annotation 4 PHE A 138
TYR A 116
LEU A 268
ARG A 274
 None
 1.46A 3sudD-6f91A:
undetectable		 3sudD-6f91A:
18.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6gww PEROXIREDOXIN

(Sulfolobus
islandicus) 		no annotation 4 PHE A  98
TYR A  54
LEU A  66
LYS A  64
 None
 1.42A 3sudD-6gwwA:
undetectable		 3sudD-6gwwA:
20.13