SIMILAR PATTERNS OF AMINO ACIDS FOR 3Q07_A_WPPA300_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1bf2 ISOAMYLASE

(Pseudomonas
amyloderamosa) 		PF00128
(Alpha-amylase)
PF02922
(CBM_48) 		4 TYR A 685
PRO A 648
THR A 693
THR A 711
 None
 1.45A 3q07A-1bf2A:
undetectable		 3q07A-1bf2A:
16.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1buy PROTEIN
(ERYTHROPOIETIN)

(Homo sapiens) 		PF00758
(EPO_TPO) 		4 TYR A 145
PRO A  42
THR A  40
THR A  26
 None
 1.36A 3q07A-1buyA:
undetectable		 3q07A-1buyA:
22.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1cg2 CARBOXYPEPTIDASE G2

(Pseudomonas sp.
RS-16) 		PF01546
(Peptidase_M20)
PF07687
(M20_dimer) 		4 TYR A 391
PRO A 137
THR A 115
THR A 202
 None
 1.39A 3q07A-1cg2A:
undetectable		 3q07A-1cg2A:
23.25
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1hzo BETA-LACTAMASE

(Proteus
vulgaris) 		PF13354
(Beta-lactamase2) 		4 TYR A 105
PRO A 167
THR A 171
THR A 235
 MES  A1000 (-3.9A)
None
None
MES  A1000 (-3.7A)
 0.39A 3q07A-1hzoA:
46.4		 3q07A-1hzoA:
65.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1j9m DD-TRANSPEPTIDASE

(Streptomyces
sp. K15) 		PF00768
(Peptidase_S11) 		4 TYR A 151
PRO A 154
THR A 158
THR A 130
 None
 1.37A 3q07A-1j9mA:
21.9		 3q07A-1j9mA:
28.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jft PURINE NUCLEOTIDE
SYNTHESIS REPRESSOR

(Escherichia
coli) 		PF00356
(LacI)
PF13377
(Peripla_BP_3) 		4 CYH A 245
TYR A  73
PRO A 187
THR A 289
 None
HPA  A 599 (-3.2A)
None
None
 1.21A 3q07A-1jftA:
undetectable		 3q07A-1jftA:
20.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1x4g NUCLEOLYSIN TIAR

(Homo sapiens) 		PF00076
(RRM_1) 		4 CYH A  93
TYR A  63
THR A  84
THR A  27
 None
 1.41A 3q07A-1x4gA:
undetectable		 3q07A-1x4gA:
17.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2a0u INITIATION FACTOR 2B

(Leishmania
major) 		PF01008
(IF-2B) 		4 TYR A 149
PRO A  64
THR A 187
THR A  17
 None
 1.45A 3q07A-2a0uA:
undetectable		 3q07A-2a0uA:
22.88
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2fez PROBABLE REGULATORY
PROTEIN EMBR

(Mycobacterium
tuberculosis) 		PF00486
(Trans_reg_C)
PF00498
(FHA)
PF03704
(BTAD) 		4 TYR A 203
PRO A 206
THR A 246
THR A 233
 None
 1.06A 3q07A-2fezA:
undetectable		 3q07A-2fezA:
23.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ji9 OXALYL-COA
DECARBOXYLASE

(Oxalobacter
formigenes) 		PF00205
(TPP_enzyme_M)
PF02775
(TPP_enzyme_C)
PF02776
(TPP_enzyme_N) 		4 CYH A 435
TYR A 468
PRO A 471
THR A 473
 None
 1.33A 3q07A-2ji9A:
undetectable		 3q07A-2ji9A:
18.30
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2nbi HEP200 PROTEIN

(Cylindrotheca
fusiformis) 		no annotation 4 TYR A 117
PRO A 169
THR A 174
THR A 151
 None
 1.45A 3q07A-2nbiA:
undetectable		 3q07A-2nbiA:
19.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2p50 N-ACETYLGLUCOSAMINE-
6-PHOSPHATE
DEACETYLASE

(Escherichia
coli) 		PF01979
(Amidohydro_1) 		4 CYH A  63
PRO A  97
THR A  79
THR A 312
 None
 1.40A 3q07A-2p50A:
undetectable		 3q07A-2p50A:
21.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qdx FERREDOXIN REDUCTASE

(Pseudomonas
aeruginosa) 		PF00175
(NAD_binding_1)
PF00970
(FAD_binding_6) 		4 TYR A  53
PRO A 121
THR A  34
THR A  24
 FAD  A 400 (-3.9A)
None
None
None
 0.96A 3q07A-2qdxA:
undetectable		 3q07A-2qdxA:
19.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2uuu ALKYLDIHYDROXYACETON
EPHOSPHATE SYNTHASE

(Dictyostelium
discoideum) 		PF01565
(FAD_binding_4)
PF02913
(FAD-oxidase_C) 		4 CYH A 581
PRO A 577
THR A 274
THR A 189
 None
 1.47A 3q07A-2uuuA:
undetectable		 3q07A-2uuuA:
17.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2v2t TRANSCRIPTION FACTOR
RELB

(Mus musculus) 		PF00554
(RHD_DNA_bind)
PF16179
(RHD_dimer) 		4 TYR A 104
PRO A 264
THR A 159
THR A 108
 None
 1.39A 3q07A-2v2tA:
undetectable		 3q07A-2v2tA:
21.52
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2wyx BETA-LACTAMSE TOHO-1

(Escherichia
coli) 		PF13354
(Beta-lactamase2) 		5 CYH A  69
TYR A 105
PRO A 167
THR A 171
THR A 235
 None
 0.57A 3q07A-2wyxA:
45.7		 3q07A-2wyxA:
83.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3a1j CELL CYCLE
CHECKPOINT PROTEIN
RAD1

(Homo sapiens) 		PF02144
(Rad1) 		4 CYH C 215
TYR C 203
PRO C 186
THR C 218
 None
 1.31A 3q07A-3a1jC:
undetectable		 3q07A-3a1jC:
20.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3c2u XYLOSIDASE/ARABINOSI
DASE

(Selenomonas
ruminantium) 		PF04616
(Glyco_hydro_43)
PF07081
(DUF1349) 		4 CYH A 413
TYR A 501
PRO A 287
THR A 439
 None
 1.48A 3q07A-3c2uA:
undetectable		 3q07A-3c2uA:
19.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3egj N-ACETYLGLUCOSAMINE-
6-PHOSPHATE
DEACETYLASE

(Vibrio cholerae) 		PF01979
(Amidohydro_1) 		4 CYH A  63
PRO A  94
THR A  76
THR A 309
 None
 1.26A 3q07A-3egjA:
undetectable		 3q07A-3egjA:
22.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ftj MACROLIDE EXPORT
ATP-BINDING/PERMEASE
PROTEIN MACB

(Aggregatibacter
actinomycetemcomitans) 		PF12704
(MacB_PCD) 		4 TYR A 380
PRO A 464
THR A 401
THR A 482
 None
 1.42A 3q07A-3ftjA:
undetectable		 3q07A-3ftjA:
21.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gnr OS03G0212800 PROTEIN

(Oryza sativa) 		PF00232
(Glyco_hydro_1) 		4 TYR A 321
PRO A 371
THR A 425
THR A 393
 TYR  A 321 (-1.3A)
PRO  A 371 ( 1.1A)
THR  A 425 ( 0.8A)
THR  A 393 ( 0.8A)
 1.38A 3q07A-3gnrA:
undetectable		 3q07A-3gnrA:
22.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3jzd IRON-CONTAINING
ALCOHOL
DEHYDROGENASE

(Cupriavidus
pinatubonensis) 		PF00465
(Fe-ADH) 		4 TYR A 224
PRO A 156
THR A 120
THR A 231
 None
None
NAD  A 400 (-3.8A)
None
 1.38A 3q07A-3jzdA:
undetectable		 3q07A-3jzdA:
21.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ph9 ANTERIOR GRADIENT
PROTEIN 3 HOMOLOG

(Homo sapiens) 		PF13899
(Thioredoxin_7) 		4 TYR A  54
PRO A 124
THR A 127
THR A  47
 None
 1.31A 3q07A-3ph9A:
undetectable		 3q07A-3ph9A:
20.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ryt PLEXIN-A1

(Mus musculus) 		PF08337
(Plexin_cytopl) 		4 CYH A1464
TYR A1543
PRO A1318
THR A1309
 None
 1.45A 3q07A-3rytA:
undetectable		 3q07A-3rytA:
17.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3w4q BETA-LACTAMASE

(Burkholderia
multivorans) 		PF13354
(Beta-lactamase2) 		4 CYH A  69
TYR A 105
THR A 171
THR A 235
 None
 0.38A 3q07A-3w4qA:
44.1		 3q07A-3w4qA:
57.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3zny CTX-M-12A ENZYME

(Klebsiella
pneumoniae) 		PF13354
(Beta-lactamase2) 		5 CYH A  69
TYR A 105
PRO A 167
THR A 171
THR A 235
 None
 0.37A 3q07A-3znyA:
47.4		 3q07A-3znyA:
81.75
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4c75 BETA-LACTAMASE

(synthetic
construct) 		PF13354
(Beta-lactamase2) 		4 CYH A  69
TYR A 105
PRO A 167
THR A 235
 None
None
None
SO4  A 291 (-3.8A)
 0.49A 3q07A-4c75A:
42.7		 3q07A-4c75A:
56.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4efz METALLO-BETA-LACTAMA
SE FAMILY PROTEIN

(Burkholderia
pseudomallei) 		PF00753
(Lactamase_B) 		4 CYH A 182
PRO A 141
THR A 171
THR A 251
 None
 1.48A 3q07A-4efzA:
undetectable		 3q07A-4efzA:
20.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4n9g ANTIBODY 17HD9,
HEAVY CHAIN
EPITOPE SCAFFOLD
RSV_1ISEA_FFL_001_C

(Macaca mulatta;
synthetic
construct) 		PF01765
(RRF)
PF07654
(C1-set)
PF07686
(V-set) 		4 TYR A  59
PRO C  75
THR C  77
THR A  35
 None
 1.50A 3q07A-4n9gA:
undetectable		 3q07A-4n9gA:
25.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wa8 FLAP ENDONUCLEASE 1

(Methanopyrus
kandleri) 		PF00752
(XPG_N)
PF00867
(XPG_I) 		4 TYR A  34
PRO A  46
THR A  55
THR A 186
 None
 1.28A 3q07A-4wa8A:
undetectable		 3q07A-4wa8A:
24.31
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5e2e BETA-LACTAMASE

(Yersinia
enterocolitica) 		PF13354
(Beta-lactamase2) 		5 CYH A  46
TYR A  82
PRO A 144
THR A 148
THR A 212
 None
 0.44A 3q07A-5e2eA:
44.3		 3q07A-5e2eA:
58.21
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5eoe BETA-LACTAMASE

(Pseudomonas
aeruginosa) 		PF13354
(Beta-lactamase2) 		4 TYR A  97
PRO A 160
THR A 164
THR A 228
 CIT  A 303 (-4.1A)
None
None
CIT  A 303 (-3.6A)
 0.37A 3q07A-5eoeA:
40.7		 3q07A-5eoeA:
41.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ggs PROGRAMMED CELL
DEATH PROTEIN 1

(Homo sapiens) 		PF07686
(V-set) 		4 CYH Y 123
PRO Y  34
THR Y  36
THR Y  76
 None
 1.44A 3q07A-5ggsY:
undetectable		 3q07A-5ggsY:
19.68
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5gl9 BETA-LACTAMASE

(Burkholderia
thailandensis) 		PF13354
(Beta-lactamase2) 		4 CYH A  69
TYR A 105
THR A 171
THR A 235
 None
 0.69A 3q07A-5gl9A:
45.0		 3q07A-5gl9A:
57.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kjm N-LYSINE
METHYLTRANSFERASE
SMYD2

(Homo sapiens) 		PF00856
(SET)
PF01753
(zf-MYND) 		4 CYH A 209
TYR A 258
THR A 247
THR A 238
 ZN  A 505 (-2.4A)
6TM  A 502 ( 4.2A)
None
None
 1.26A 3q07A-5kjmA:
undetectable		 3q07A-5kjmA:
20.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mg5 HYDROXYMETHYLGLUTARY
L-COA SYNTHASE

(Pseudomonas
protegens) 		no annotation 4 CYH A  83
TYR A 198
PRO A 193
THR A 144
 None
 1.26A 3q07A-5mg5A:
undetectable		 3q07A-5mg5A:
17.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n81 TYROCIDINE SYNTHASE
1

(Brevibacillus
parabrevis) 		no annotation 4 TYR A 317
PRO A 287
THR A 291
THR A 276
 None
None
None
8Q2  A 501 ( 4.9A)
 1.43A 3q07A-5n81A:
undetectable		 3q07A-5n81A:
14.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5wt4 CYSTEINE DESULFURASE
ISCS

(Helicobacter
pylori) 		no annotation 4 TYR A 263
PRO A 296
THR A 298
THR A 362
 None
 1.47A 3q07A-5wt4A:
undetectable		 3q07A-5wt4A:
16.73
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
6bu3 BETA-LACTAMASE

(Escherichia
coli) 		no annotation 5 CYH A  69
TYR A 105
PRO A 167
THR A 171
THR A 235
 None
3GK  A 302 ( 3.5A)
3GK  A 301 (-4.1A)
3GK  A 301 (-4.1A)
3GK  A 301 (-3.7A)
 0.16A 3q07A-6bu3A:
49.3		 3q07A-6bu3A:
97.50