SIMILAR PATTERNS OF AMINO ACIDS FOR 3PEO_J_CU9J301

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qza SECRETED EFFECTOR
PROTEIN

(Salmonella
enterica) 		PF13599
(Pentapeptide_4)
PF13979
(SopA_C)
PF13981
(SopA) 		5 LYS A 354
GLN A 281
ILE A 639
SER A 239
SER A 259
 None
 1.34A 3peoI-2qzaA:
0.0
3peoJ-2qzaA:
0.0		 3peoI-2qzaA:
17.36
3peoJ-2qzaA:
17.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dml PUTATIVE
UNCHARACTERIZED
PROTEIN

(Paracoccus
denitrificans) 		no annotation 5 TRP A  19
THR A  30
TYR A  27
GLN A  26
ILE A  23
 None
 1.47A 3peoI-3dmlA:
0.0
3peoJ-3dmlA:
0.0		 3peoI-3dmlA:
19.56
3peoJ-3dmlA:
19.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bsq CATHEPSIN S

(Mus musculus) 		PF00112
(Peptidase_C1) 		5 GLN A 238
TYR A 236
ILE A 202
SER A 258
SER A 336
 None
None
SO4  A1345 (-4.3A)
None
None
 1.26A 3peoI-4bsqA:
0.0
3peoJ-4bsqA:
0.0		 3peoI-4bsqA:
21.78
3peoJ-4bsqA:
21.78
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4haq GH7 FAMILY PROTEIN

(Limnoria
quadripunctata) 		PF00840
(Glyco_hydro_7) 		5 TYR A 246
GLN A 244
TYR A 326
GLN A 327
ILE A 325
 None
 1.44A 3peoI-4haqA:
0.0
3peoJ-4haqA:
0.0		 3peoI-4haqA:
19.74
3peoJ-4haqA:
19.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pba UNCHARACTERIZED
PROTEIN ABASI

(Acinetobacter
baumannii) 		no annotation 5 TRP B 166
GLN B  16
TYR B  12
ILE B 168
SER B 280
 None
 1.11A 3peoI-4pbaB:
0.0
3peoJ-4pbaB:
0.0		 3peoI-4pbaB:
20.41
3peoJ-4pbaB:
20.41
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4zjs ACETYLCHOLINE
RECEPTOR SUBUNIT
ALPHA,SOLUBLE
ACETYLCHOLINE
RECEPTOR,ACETYLCHOLI
NE RECEPTOR SUBUNIT
ALPHA,SOLUBLE
ACETYLCHOLINE
RECEPTOR

(Aplysia
californica;
Homo sapiens) 		PF02931
(Neur_chan_LBD) 		5 THR A  36
GLN A  38
GLN A  57
ILE A 118
SER A 167
 None
 0.61A 3peoI-4zjsA:
29.2
3peoJ-4zjsA:
29.8		 3peoI-4zjsA:
82.17
3peoJ-4zjsA:
82.17
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5xgl SOLUBLE
ACETYLCHOLINE
RECEPTOR

(Aplysia
californica) 		no annotation 7 THR A  34
GLN A  36
TYR A  53
GLN A  55
ILE A 116
SER A 164
SER A 165
 None
 0.34A 3peoI-5xglA:
30.6
3peoJ-5xglA:
31.5		 3peoI-5xglA:
98.75
3peoJ-5xglA:
98.75