SIMILAR PATTERNS OF AMINO ACIDS FOR 3O0Q_A_ADNA1004

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1bhe POLYGALACTURONASE

(Pectobacterium
carotovorum) 		PF00295
(Glyco_hydro_28) 		5 ASN A 110
SER A  64
GLY A 112
THR A 186
THR A 163
 None
 1.23A 3o0qA-1bheA:
0.0		 3o0qA-1bheA:
20.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1l1l RIBONUCLEOSIDE
TRIPHOSPHATE
REDUCTASE

(Lactobacillus
leichmannii) 		PF02867
(Ribonuc_red_lgC) 		5 ASN A 351
SER A 353
GLY A 377
SER A 648
THR A 650
 None
 0.93A 3o0qA-1l1lA:
1.2		 3o0qA-1l1lA:
23.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1l1l RIBONUCLEOSIDE
TRIPHOSPHATE
REDUCTASE

(Lactobacillus
leichmannii) 		PF02867
(Ribonuc_red_lgC) 		5 SER A 353
GLY A 377
CYH A 408
SER A 648
THR A 650
 None
 0.74A 3o0qA-1l1lA:
1.2		 3o0qA-1l1lA:
23.15
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1xje RIBONUCLEOTIDE
REDUCTASE,
B12-DEPENDENT

(Thermotoga
maritima) 		PF00317
(Ribonuc_red_lgN)
PF02867
(Ribonuc_red_lgC) 		8 MET A 212
ASN A 242
SER A 244
ASP A 295
GLY A 297
CYH A 322
SER A 596
THR A 626
 None
None
None
None
None
GDP  A1002 (-3.6A)
None
None
 0.54A 3o0qA-1xjeA:
66.1		 3o0qA-1xjeA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1xje RIBONUCLEOTIDE
REDUCTASE,
B12-DEPENDENT

(Thermotoga
maritima) 		PF00317
(Ribonuc_red_lgN)
PF02867
(Ribonuc_red_lgC) 		8 MET A 212
ASN A 242
SER A 244
ASP A 295
GLY A 297
CYH A 322
THR A 598
THR A 626
 None
None
None
None
None
GDP  A1002 (-3.6A)
None
None
 0.15A 3o0qA-1xjeA:
66.1		 3o0qA-1xjeA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5fq6 SUSC/RAGA FAMILY
TONB-LINKED OUTER
MEMBRANE PROTEIN

(Bacteroides
thetaiotaomicron) 		PF00593
(TonB_dep_Rec)
PF07715
(Plug) 		5 ASN B 963
GLY B 965
SER B  74
THR B  76
THR B 954
 None
 1.35A 3o0qA-5fq6B:
0.0		 3o0qA-5fq6B:
21.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gqr LEUCINE-RICH REPEAT
RECEPTOR-LIKE
PROTEIN KINASE TDR

(Arabidopsis
thaliana) 		PF00560
(LRR_1)
PF08263
(LRRNT_2)
PF13855
(LRR_8) 		5 ASN B 356
SER B 334
GLY B 335
THR B 382
THR B 358
 None
 1.46A 3o0qA-5gqrB:
1.1		 3o0qA-5gqrB:
22.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5mqo NON-REDUCING END
BETA-L-ARABINOFURANO
SIDASE

(Bacteroides
thetaiotaomicron) 		PF07944
(Glyco_hydro_127) 		5 ASN A 385
SER A 418
GLY A 419
CYH A 411
THR A 465
 None
 1.44A 3o0qA-5mqoA:
0.8		 3o0qA-5mqoA:
21.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6byi BETA-MANNOSIDASE

(Xanthomonas
citri) 		no annotation 5 ASP A 817
GLY A 818
SER A 844
THR A 842
THR A 861
 None
 1.36A 3o0qA-6byiA:
3.2		 3o0qA-6byiA:
undetectable