SIMILAR PATTERNS OF AMINO ACIDS FOR 3MNP_A_DEXA784_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1iug PUTATIVE ASPARTATE
AMINOTRANSFERASE

(Thermus
thermophilus) 		PF00266
(Aminotran_5) 		4 LEU A 263
TRP A   3
MET A 340
TYR A 332
 None
 1.31A 3mnpA-1iugA:
0.0		 3mnpA-1iugA:
19.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1obh LEUCYL-TRNA
SYNTHETASE

(Thermus
thermophilus) 		PF00133
(tRNA-synt_1)
PF08264
(Anticodon_1)
PF13603
(tRNA-synt_1_2)
PF14795
(Leucyl-specific) 		4 LEU A 736
MET A  58
GLN A  69
TYR A  71
 None
 1.40A 3mnpA-1obhA:
0.1		 3mnpA-1obhA:
14.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yfo RECEPTOR PROTEIN
TYROSINE PHOSPHATASE
ALPHA

(Mus musculus) 		PF00102
(Y_phosphatase) 		4 MET A 449
LEU A 450
MET A 411
TYR A 486
 None
 1.49A 3mnpA-1yfoA:
0.0		 3mnpA-1yfoA:
20.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ane ATP-DEPENDENT
PROTEASE LA

(Escherichia
coli) 		PF02190
(LON_substr_bdg) 		4 MET A  51
LEU A  52
MET A  25
TYR A 116
 None
 1.42A 3mnpA-2aneA:
undetectable		 3mnpA-2aneA:
19.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2b4v RNA EDITING COMPLEX
PROTEIN MP57

(Trypanosoma
brucei) 		PF01909
(NTP_transf_2)
PF03828
(PAP_assoc) 		4 LEU A  98
MET A  56
GLN A  64
TYR A 352
 None
 1.29A 3mnpA-2b4vA:
0.2		 3mnpA-2b4vA:
18.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qym PHOSPHODIESTERASE 4C

(Homo sapiens) 		PF00233
(PDEase_I) 		4 MET A 408
LEU A 405
MET A 399
GLN A 430
 None
 1.21A 3mnpA-2qymA:
3.4		 3mnpA-2qymA:
21.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3cnu PREDICTED CODING
REGION AF_1534

(Archaeoglobus
fulgidus) 		PF02036
(SCP2) 		4 TRP A  28
MET A  98
GLN A  33
TYR A  42
 None
 1.38A 3mnpA-3cnuA:
undetectable		 3mnpA-3cnuA:
17.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3g4g CAMP-SPECIFIC
3',5'-CYCLIC
PHOSPHODIESTERASE 4D

(Homo sapiens) 		PF00233
(PDEase_I) 		4 MET A 452
LEU A 449
MET A 443
GLN A 474
 None
 1.47A 3mnpA-3g4gA:
undetectable		 3mnpA-3g4gA:
20.43
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ius UNCHARACTERIZED
CONSERVED PROTEIN

(Ruegeria
pomeroyi) 		no annotation 4 LEU A  64
TRP A  26
MET A 193
GLN A  91
 None
 1.17A 3mnpA-3iusA:
0.0		 3mnpA-3iusA:
19.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kjk NMB1025 PROTEIN

(Neisseria
meningitidis) 		PF01042
(Ribonuc_L-PSP) 		4 MET A  27
TRP A  80
MET A  76
GLN A  45
 None
 1.31A 3mnpA-3kjkA:
undetectable		 3mnpA-3kjkA:
16.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4arc LEUCINE--TRNA LIGASE

(Escherichia
coli) 		PF00133
(tRNA-synt_1)
PF08264
(Anticodon_1)
PF13603
(tRNA-synt_1_2) 		4 MET A 114
LEU A 115
TRP A  79
GLN A 631
 None
 0.80A 3mnpA-4arcA:
undetectable		 3mnpA-4arcA:
15.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4arv PHYTASE

(Yersinia
kristensenii) 		PF00328
(His_Phos_2) 		4 MET A 360
LEU A 363
TRP A  41
GLN A 326
 None
 1.23A 3mnpA-4arvA:
undetectable		 3mnpA-4arvA:
23.94
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4p6w GLUCOCORTICOID
RECEPTOR

(Homo sapiens) 		PF00104
(Hormone_recep) 		4 LEU A 563
TRP A 600
MET A 604
TYR A 735
 MOF  A 801 (-3.9A)
None
None
MOF  A 801 (-4.8A)
 0.74A 3mnpA-4p6wA:
37.7		 3mnpA-4p6wA:
91.67
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4p6w GLUCOCORTICOID
RECEPTOR

(Homo sapiens) 		PF00104
(Hormone_recep) 		4 MET A 560
LEU A 563
TRP A 600
MET A 604
 MOF  A 801 (-3.9A)
MOF  A 801 (-3.9A)
None
None
 0.21A 3mnpA-4p6wA:
37.7		 3mnpA-4p6wA:
91.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pot VP1

(Human
polyomavirus 9) 		PF00718
(Polyoma_coat) 		4 MET A 123
LEU A 286
MET A  56
TYR A  51
 None
 1.08A 3mnpA-4potA:
undetectable		 3mnpA-4potA:
22.48
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ry8 PERIPLASMIC BINDING
PROTEIN

(Pseudothermotoga
lettingae) 		PF13407
(Peripla_BP_4) 		4 LEU A 143
MET A 175
GLN A 147
TYR A 247
 None
 1.46A 3mnpA-4ry8A:
undetectable		 3mnpA-4ry8A:
20.82
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4uug AMINE TRANSAMINASE

(Aspergillus
fumigatus) 		PF01063
(Aminotran_4) 		4 LEU A 210
MET A 271
GLN A 262
TYR A 227
 None
 1.37A 3mnpA-4uugA:
undetectable		 3mnpA-4uugA:
20.41
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i6z SODIUM-DEPENDENT
SEROTONIN
TRANSPORTER

(Homo sapiens) 		PF00209
(SNF) 		4 MET A 528
LEU A 529
TRP A 541
GLN A 141
 None
 1.35A 3mnpA-5i6zA:
undetectable		 3mnpA-5i6zA:
18.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5l3x NEGATIVE ELONGATION
FACTOR A
NEGATIVE ELONGATION
FACTOR C/D

(Homo sapiens) 		PF04858
(TH1)
no annotation 		4 MET B 245
TRP A  89
GLN B 242
TYR B 238
 None
 1.42A 3mnpA-5l3xB:
undetectable		 3mnpA-5l3xB:
23.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5l3x NEGATIVE ELONGATION
FACTOR A
NEGATIVE ELONGATION
FACTOR C/D

(Homo sapiens) 		PF04858
(TH1)
no annotation 		4 MET B 245
TRP A  89
MET A  92
GLN B 242
 None
 1.48A 3mnpA-5l3xB:
undetectable		 3mnpA-5l3xB:
23.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5uc1 GLUCOCORTICOID
RECEPTOR

(Heterocephalus
glaber) 		no annotation 4 MET A 556
LEU A 559
MET A 600
GLN A 638
 None
486  A 801 (-4.7A)
None
486  A 801 (-4.6A)
 1.23A 3mnpA-5uc1A:
25.4		 3mnpA-5uc1A:
90.36
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ufs ANCESTRAL
GLUCOCORTICOID
RECEPTOR2

(unidentified) 		PF00104
(Hormone_recep) 		4 MET A  29
LEU A  32
TRP A  69
MET A  73
 1TA  A 301 ( 2.9A)
1TA  A 301 (-3.5A)
None
1TA  A 301 (-4.2A)
 0.18A 3mnpA-5ufsA:
38.6		 3mnpA-5ufsA:
75.20