SIMILAR PATTERNS OF AMINO ACIDS FOR 3LSK_C_ACTC901

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cas CANINE PARVOVIRUS
EMPTY CAPSID (STRAIN
D) VIRAL PROTEIN 2

(Carnivore
protoparvovirus
1) 		PF00740
(Parvo_coat) 		4 GLN A 468
PHE A 185
HIS A 483
ASN A 485
 None
 1.44A 3lskC-2casA:
0.0		 3lskC-2casA:
21.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yhe SEC-ALKYL SULFATASE

(Pseudomonas sp.
DSM 6611) 		PF00753
(Lactamase_B)
PF14863
(Alkyl_sulf_dimr)
PF14864
(Alkyl_sulf_C) 		4 GLN A 232
PHE A 250
HIS A 317
ASN A 318
 SO4  A 801 (-3.1A)
None
SO4  A 801 (-4.3A)
SO4  A 801 (-3.8A)
 1.38A 3lskC-2yheA:
0.0		 3lskC-2yheA:
23.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hwc CHLOROPHENOL-4-MONOO
XYGENASE COMPONENT 2

(Burkholderia
cepacia) 		PF03241
(HpaB)
PF11794
(HpaB_N) 		4 GLN A3069
PHE A3043
HIS A3105
ASN A3106
 None
 1.41A 3lskC-3hwcA:
0.0		 3lskC-3hwcA:
22.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4f85 GERANYL DIPHOSPHATE
2-C-METHYLTRANSFERAS
E

(Streptomyces
lasaliensis) 		PF02353
(CMAS) 		4 SER A 119
GLN A  92
HIS A  57
ASN A 180
 None
 1.32A 3lskC-4f85A:
2.0		 3lskC-4f85A:
18.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4k3z D-ERYTHRULOSE
4-PHOSPHATE
DEHYDROGENASE

(Brucella
melitensis) 		no annotation 4 SER A  71
PHE A 158
HIS A 227
ASN A   8
 None
 0.88A 3lskC-4k3zA:
0.0		 3lskC-4k3zA:
21.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6f2u ALDO-KETO REDUCTASE
FAMILY 1 MEMBER C3

(Homo sapiens) 		no annotation 4 SER A 118
GLN A 172
HIS A 314
ASN A 316
 CJ2  A 402 ( 3.7A)
None
None
None
 1.46A 3lskC-6f2uA:
0.9		 3lskC-6f2uA:
undetectable