SIMILAR PATTERNS OF AMINO ACIDS FOR 3LOQ_A_ACTA279

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1afq BOVINE
GAMMA-CHYMOTRYPSIN

(Bos taurus) 		PF00089
(Trypsin) 		4 SER C 217
SER C 223
THR C 222
SER C 221
 None
 1.41A 3loqA-1afqC:
undetectable		 3loqA-1afqC:
15.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1dlk THROMBIN HEAVY CHAIN

(Bos taurus) 		PF00089
(Trypsin) 		4 SER B 217
SER B 223
THR B 222
SER B 221
 None
 1.43A 3loqA-1dlkB:
0.0		 3loqA-1dlkB:
19.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1g7y STEM/LEAF LECTIN
DB58

(Vigna
unguiculata) 		PF00139
(Lectin_legB) 		4 SER A 226
SER A  70
THR A  69
SER A 228
 None
 1.15A 3loqA-1g7yA:
undetectable		 3loqA-1g7yA:
22.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lu2 LECTIN

(Vigna
unguiculata) 		PF00139
(Lectin_legB) 		4 SER A 226
SER A  70
THR A  69
SER A 228
 None
 1.13A 3loqA-1lu2A:
0.0		 3loqA-1lu2A:
25.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1m9u EARTHWORM
FIBRINOLYTIC ENZYME

(Eisenia fetida) 		PF00089
(Trypsin) 		4 SER A 242
SER A  48
THR A  50
SER A  51
 None
 1.32A 3loqA-1m9uA:
undetectable		 3loqA-1m9uA:
20.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2bqp PROTEIN (PEA LECTIN)

(Pisum sativum) 		PF00139
(Lectin_legB) 		4 SER A 226
SER A  66
THR A  65
SER A 228
 None
 1.15A 3loqA-2bqpA:
0.0		 3loqA-2bqpA:
21.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2e0n PRECORRIN-2
C20-METHYLTRANSFERAS
E

(Chlorobaculum
tepidum) 		PF00590
(TP_methylase) 		4 SER A   9
SER A 111
THR A 112
SER A 114
 None
 1.46A 3loqA-2e0nA:
0.0		 3loqA-2e0nA:
22.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2eig LECTIN

(Lotus
tetragonolobus) 		PF00139
(Lectin_legB) 		4 SER A 220
SER A  65
THR A  64
SER A 222
 None
None
None
NAG  A1001 (-3.5A)
 1.19A 3loqA-2eigA:
0.0		 3loqA-2eigA:
20.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2f1z UBIQUITIN
CARBOXYL-TERMINAL
HYDROLASE 7

(Homo sapiens) 		PF00443
(UCH)
PF00917
(MATH) 		4 SER A 125
SER A 129
THR A 128
SER A 127
 None
 1.46A 3loqA-2f1zA:
0.0		 3loqA-2f1zA:
18.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2kyb MANNOSYL-GLYCOPROTEI
N
ENDO-BETA-N-ACETYLGL
UCOSAMINIDASE DOMAIN
PROTEIN, POSSIBLE
ENTEROTOXIN

(Clostridium
perfringens) 		PF08239
(SH3_3) 		4 SER A  16
SER A  21
THR A  20
SER A  19
 None
 0.86A 3loqA-2kybA:
undetectable		 3loqA-2kybA:
13.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2uu7 GLUTAMINE SYNTHETASE

(Canis lupus) 		PF00120
(Gln-synt_C)
PF03951
(Gln-synt_N) 		4 SER A  75
SER A  66
THR A  67
SER A  65
 None
 1.34A 3loqA-2uu7A:
undetectable		 3loqA-2uu7A:
21.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3aib GLUCOSYLTRANSFERASE-
SI

(Streptococcus
mutans) 		PF02324
(Glyco_hydro_70) 		4 SER A 906
SER A 902
THR A 903
SER A 910
 None
 1.22A 3loqA-3aibA:
0.9		 3loqA-3aibA:
16.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e2n CYTOCHROME C
PEROXIDASE

(Pisum sativum;
Saccharomyces
cerevisiae) 		PF00141
(peroxidase) 		4 SER A 102
SER A  47
THR A  46
SER A  59
 None
 1.46A 3loqA-3e2nA:
undetectable		 3loqA-3e2nA:
21.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ffr PHOSPHOSERINE
AMINOTRANSFERASE
SERC

(Cytophaga
hutchinsonii) 		PF00266
(Aminotran_5) 		4 SER A  94
SER A 142
THR A 140
SER A 141
 None
None
LLP  A 190 ( 2.9A)
None
 1.38A 3loqA-3ffrA:
3.9		 3loqA-3ffrA:
25.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3g6l CHITINASE

(Clonostachys
rosea) 		PF00704
(Glyco_hydro_18) 		4 SER A 267
SER A 263
THR A 262
SER A 261
 None
 1.32A 3loqA-3g6lA:
1.3		 3loqA-3g6lA:
21.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gq9 PRENECK APPENDAGE
PROTEIN

(Bacillus virus
phi29) 		PF11962
(Peptidase_G2)
PF12708
(Pectate_lyase_3) 		4 SER A 604
SER A 592
THR A 606
SER A 607
 None
 1.48A 3loqA-3gq9A:
undetectable		 3loqA-3gq9A:
19.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h0g DNA-DIRECTED RNA
POLYMERASES I, II,
AND III SUBUNIT
RPABC3

(Schizosaccharomyces
pombe) 		PF03870
(RNA_pol_Rpb8) 		4 SER H   2
SER H  61
THR H  60
SER H   4
 None
 1.14A 3loqA-3h0gH:
undetectable		 3loqA-3h0gH:
18.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ke3 PUTATIVE
SERINE-PYRUVATE
AMINOTRANSFERASE

(Psychrobacter
arcticus) 		PF00266
(Aminotran_5) 		4 SER A  85
SER A 147
THR A 145
SER A 146
 None
None
LLP  A 198 (-3.0A)
None
 1.39A 3loqA-3ke3A:
2.7		 3loqA-3ke3A:
23.47
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3loq UNIVERSAL STRESS
PROTEIN

(Archaeoglobus
fulgidus) 		PF00582
(Usp) 		4 SER A 235
SER A 248
THR A 249
SER A 250
 ACT  A 279 ( 3.2A)
ACT  A 279 ( 4.2A)
CL  A 274 ( 3.4A)
ACT  A 279 (-3.0A)
 0.02A 3loqA-3loqA:
49.7		 3loqA-3loqA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mwb PREPHENATE
DEHYDRATASE

(Paenarthrobacter
aurescens) 		PF00800
(PDT)
PF01842
(ACT) 		4 SER A 132
SER A 106
THR A 107
SER A 137
 None
 1.35A 3loqA-3mwbA:
undetectable		 3loqA-3mwbA:
23.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pvo C-REACTIVE PROTEIN

(Homo sapiens) 		PF00354
(Pentaxin) 		4 SER A 151
SER A  18
THR A  17
SER A  15
 None
 1.33A 3loqA-3pvoA:
undetectable		 3loqA-3pvoA:
23.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qgk UREASE SUBUNIT BETA
2

(Helicobacter
mustelae) 		PF00449
(Urease_alpha)
PF01979
(Amidohydro_1) 		4 SER C 134
SER C 297
THR C 358
SER C 359
 None
 1.25A 3loqA-3qgkC:
0.0		 3loqA-3qgkC:
20.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qpf PUTATIVE
UNCHARACTERIZED
PROTEIN

(Streptococcus
pneumoniae) 		PF06824
(Glyco_hydro_125) 		4 SER A 217
SER A 349
THR A 351
SER A 348
 None
 1.42A 3loqA-3qpfA:
undetectable		 3loqA-3qpfA:
18.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3r08 T-CELL SURFACE
GLYCOPROTEIN CD3
EPSILON CHAIN
MOUSE ANTI-MOUSE
CD3EPSILON ANTIBODY
2C11 HEAVY CHAIN

(Cricetulus
migratorius;
Cricetulus
migratorius) 		PF16681
(Ig_5)
PF07654
(C1-set)
PF07686
(V-set) 		4 SER E  25
SER H  53
THR H  52
SER H  52
 None
 1.47A 3loqA-3r08E:
undetectable		 3loqA-3r08E:
16.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3r27 HETEROGENEOUS
NUCLEAR
RIBONUCLEOPROTEIN L

(Homo sapiens) 		PF00076
(RRM_1) 		4 SER A 101
SER A 176
THR A 175
SER A 174
 None
None
GOL  A 182 (-3.1A)
GOL  A 182 (-2.6A)
 1.45A 3loqA-3r27A:
undetectable		 3loqA-3r27A:
18.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3suc PRENECK APPENDAGE
PROTEIN

(Bacillus virus
phi29) 		PF11962
(Peptidase_G2)
PF12708
(Pectate_lyase_3) 		4 SER A 604
SER A 592
THR A 606
SER A 607
 None
 1.47A 3loqA-3sucA:
undetectable		 3loqA-3sucA:
17.02
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tlk FERRIENTEROBACTIN-BI
NDING PERIPLASMIC
PROTEIN

(Escherichia
coli) 		PF01497
(Peripla_BP_2) 		4 SER A 122
SER A  51
THR A  52
SER A  53
 None
 1.49A 3loqA-3tlkA:
4.6		 3loqA-3tlkA:
19.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wcs ERYTHROAGGLUTININ

(Phaseolus
vulgaris) 		PF00139
(Lectin_legB) 		4 SER A 248
SER A  92
THR A  91
SER A 250
 None
 1.10A 3loqA-3wcsA:
undetectable		 3loqA-3wcsA:
21.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wrv TM-1 PROTEIN

(Solanum
lycopersicum) 		PF06792
(UPF0261) 		4 SER A  71
SER A  56
THR A  55
SER A  54
 None
 1.16A 3loqA-3wrvA:
3.5		 3loqA-3wrvA:
25.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4d9r COMPLEMENT FACTOR D

(Homo sapiens) 		PF00089
(Trypsin) 		4 SER A 190
SER A 195
THR A 214
SER A 215
 None
 1.31A 3loqA-4d9rA:
undetectable		 3loqA-4d9rA:
22.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4lvo SUBTILISIN-LIKE
SERINE PROTEASE

(Plasmodium
falciparum) 		PF00082
(Peptidase_S8) 		4 SER A 492
SER A 606
THR A 605
SER A 517
 None
 1.45A 3loqA-4lvoA:
undetectable		 3loqA-4lvoA:
21.51
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4p0d TRYPSIN-RESISTANT
SURFACE T6 PROTEIN

(Streptococcus
pyogenes) 		PF16569
(GramPos_pilinBB) 		4 SER A 493
SER A 499
THR A 429
SER A 495
 None
 0.97A 3loqA-4p0dA:
undetectable		 3loqA-4p0dA:
20.72
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qlj BETA-GLUCOSIDASE 7

(Oryza sativa) 		PF00232
(Glyco_hydro_1) 		4 SER A 356
SER A 443
THR A 446
SER A 447
 None
 1.39A 3loqA-4qljA:
1.5		 3loqA-4qljA:
17.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4w8j PESTICIDAL CRYSTAL
PROTEIN CRY1AC

(Bacillus
thuringiensis) 		PF00555
(Endotoxin_M)
PF03944
(Endotoxin_C)
PF03945
(Endotoxin_N) 		4 SER A 468
SER A 524
THR A 523
SER A 522
 None
 1.47A 3loqA-4w8jA:
undetectable		 3loqA-4w8jA:
13.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bv8 VON WILLEBRAND
FACTOR

(Homo sapiens) 		PF00092
(VWA)
PF16164
(VWA_N2) 		4 SER A1394
SER A1356
THR A1357
SER A1358
 None
 1.35A 3loqA-5bv8A:
1.4		 3loqA-5bv8A:
24.38
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5d6a PREDICTED ATPASE OF
THE ABC CLASS

(Vibrio
vulnificus) 		PF09818
(ABC_ATPase) 		4 SER A  95
SER A 104
THR A 105
SER A 106
 None
 1.20A 3loqA-5d6aA:
undetectable		 3loqA-5d6aA:
23.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i8o HMM5 ANTIBODY HEAVY
CHAIN

(Homo sapiens) 		PF07654
(C1-set)
PF07686
(V-set) 		4 SER H 189
SER H 131
THR H 134
SER H 133
 None
 1.44A 3loqA-5i8oH:
undetectable		 3loqA-5i8oH:
22.57