SIMILAR PATTERNS OF AMINO ACIDS FOR 3IK6_H_HCZH800_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jm7 BREAST CANCER TYPE 1
SUSCEPTIBILITY
PROTEIN

(Homo sapiens) 		PF00097
(zf-C3HC4) 		4 LYS A  45
SER A  80
LEU A  73
SER A  36
 None
 1.41A 3ik6H-1jm7A:
undetectable		 3ik6H-1jm7A:
19.76
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1n7r HYALURONIDASE

(Streptococcus
pneumoniae) 		PF02278
(Lyase_8)
PF02884
(Lyase_8_C)
PF08124
(Lyase_8_N) 		4 LYS A 839
SER A 644
LEU A 824
SER A 826
 None
 1.31A 3ik6H-1n7rA:
0.0		 3ik6H-1n7rA:
16.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1nug PROTEIN-GLUTAMINE
GLUTAMYLTRANSFERASE
E

(Homo sapiens) 		PF00868
(Transglut_N)
PF00927
(Transglut_C)
PF01841
(Transglut_core) 		4 LYS A 505
SER A 541
LEU A 507
SER A 481
 None
 1.23A 3ik6H-1nugA:
0.0		 3ik6H-1nugA:
16.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gqd 3-OXOACYL-[ACYL-CARR
IER-PROTEIN]
SYNTHASE 2

(Staphylococcus
aureus) 		PF00109
(ketoacyl-synt)
PF02801
(Ketoacyl-synt_C) 		4 LYS A 331
SER A 334
LEU A 388
SER A 357
 None
 1.36A 3ik6H-2gqdA:
0.5		 3ik6H-2gqdA:
22.99
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2mqk ATP-DEPENDENT TARGET
DNA ACTIVATOR B

(Escherichia
virus Mu) 		no annotation 4 LYS A  22
SER A  36
LEU A  26
SER A  28
 None
 1.46A 3ik6H-2mqkA:
undetectable		 3ik6H-2mqkA:
13.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mz2 GLYCEROPHOSPHORYL
DIESTER
PHOSPHODIESTERASE

(Parabacteroides
distasonis) 		PF03009
(GDPD) 		4 LYS A 156
SER A  39
LEU A 316
SER A 314
 None
 1.37A 3ik6H-3mz2A:
0.0		 3ik6H-3mz2A:
22.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4e9x MULTICOPPER OXIDASE

(uncultured
bacterium) 		PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		4 LYS A1016
SER A1149
LEU A1177
SER A1174
 None
 1.00A 3ik6H-4e9xA:
undetectable		 3ik6H-4e9xA:
21.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ebz CHITIN ELICITOR
RECEPTOR KINASE 1

(Arabidopsis
thaliana) 		PF01476
(LysM) 		4 LYS A  25
SER A 159
LEU A  99
SER A 154
 None
 1.27A 3ik6H-4ebzA:
0.0		 3ik6H-4ebzA:
21.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4l7m PUTATIVE
UNCHARACTERIZED
PROTEIN

(Thermococcus
onnurineus) 		PF13646
(HEAT_2) 		4 LYS A 226
SER A 261
LEU A 230
SER A 233
 None
 1.35A 3ik6H-4l7mA:
0.0		 3ik6H-4l7mA:
23.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4o8m TRAP DICARBOXYLATE
TRANSPORTER, DCTP
SUBUNIT

(Actinobacillus
succinogenes) 		PF03480
(DctP) 		4 LYS A 117
SER A 326
LEU A 121
SER A 123
 None
 1.24A 3ik6H-4o8mA:
9.0		 3ik6H-4o8mA:
19.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xgy GREEN FLUORESCENT
PROTEIN, MAB LCDR3,
GREEN FLUORESCENT
PROTEIN

(Aequorea
victoria;
Vibrio
parahaemolyticus;
synthetic
construct) 		PF01353
(GFP) 		4 LYS A  41
SER A 215
LEU A 234
SER A 218
 PE5  A 301 (-2.5A)
None
PE5  A 301 (-4.1A)
CRO  A  66 ( 3.2A)
 1.45A 3ik6H-4xgyA:
0.0		 3ik6H-4xgyA:
21.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xqk LLABIII

(Lactococcus
lactis) 		PF00271
(Helicase_C)
PF02384
(N6_Mtase)
PF04851
(ResIII)
PF13156
(Mrr_cat_2) 		4 LYS A 369
SER A 337
LEU A 220
SER A 217
 None
 1.38A 3ik6H-4xqkA:
undetectable		 3ik6H-4xqkA:
9.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i08 SPIKE GLYCOPROTEIN,
ENVELOPE
GLYCOPROTEIN CHIMERA

(Human
coronavirus
HKU1;
Human
immunodeficiency
virus 1) 		PF01601
(Corona_S2)
PF09408
(Spike_rec_bind)
PF16451
(Spike_NTD) 		4 LYS A 809
SER A 914
LEU A 850
SER A 806
 None
 1.47A 3ik6H-5i08A:
undetectable		 3ik6H-5i08A:
11.55
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lew DNA POLYMERASE III
SUBUNIT ALPHA

(Mycobacterium
tuberculosis) 		no annotation 4 LYS A 922
SER A 907
LEU A 926
SER A 929
 None
 1.42A 3ik6H-5lewA:
undetectable		 3ik6H-5lewA:
13.11
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5weo GLUTAMATE RECEPTOR
2,VOLTAGE-DEPENDENT
CALCIUM CHANNEL
GAMMA-2 SUBUNIT
CHIMERA

(Mus musculus;
Rattus
norvegicus) 		PF00060
(Lig_chan)
PF00822
(PMP22_Claudin)
PF01094
(ANF_receptor)
PF10613
(Lig_chan-Glu_bd) 		4 LYS A 493
SER A 497
LEU A 751
SER A 754
 None
CYZ  A1302 (-3.2A)
None
CYZ  A1302 ( 4.1A)
 0.92A 3ik6H-5weoA:
25.0		 3ik6H-5weoA:
66.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5x68 KYNURENINE
3-MONOOXYGENASE

(Homo sapiens) 		no annotation 4 LYS A  53
SER A 232
LEU A  56
SER A 108
 None
None
FAD  A 401 (-4.1A)
None
 1.45A 3ik6H-5x68A:
undetectable		 3ik6H-5x68A:
16.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6btm ALTERNATIVE COMPLEX
III SUBUNIT B

(Flavobacterium
johnsoniae) 		no annotation 4 LYS B 153
SER B 431
LEU B 149
SER B 435
 None
 1.43A 3ik6H-6btmB:
undetectable		 3ik6H-6btmB:
14.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6c26 DOLICHYL-DIPHOSPHOOL
IGOSACCHARIDE--PROTE
IN
GLYCOSYLTRANSFERASE
SUBUNIT 1

(Saccharomyces
cerevisiae) 		no annotation 4 LYS 1 275
SER 1 151
LEU 1 271
SER 1 269
 None
 1.06A 3ik6H-6c261:
undetectable		 3ik6H-6c261:
14.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6ghc -

(-) 		no annotation 4 LYS A 168
SER A 171
LEU A 148
SER A 149
 None
 1.44A 3ik6H-6ghcA:
undetectable		 3ik6H-6ghcA:
undetectable