SIMILAR PATTERNS OF AMINO ACIDS FOR 3HUO_A_PNNA303_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fbw ENDO-1,4-BETA-GLUCAN
ASE F


([Clostridium]
cellulolyticum)
PF02011
(Glyco_hydro_48)
4 GLN A 356
GLN A 324
GLY A 322
HIS A 320
None
1.41A 3huoA-1fbwA:
0.0
3huoA-1fbwA:
18.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1mwi G/U
MISMATCH-SPECIFIC
DNA GLYCOSYLASE


(Escherichia
coli)
PF03167
(UDG)
4 GLN A 110
GLN A 114
GLY A 115
HIS A  86
None
1.18A 3huoA-1mwiA:
0.0
3huoA-1mwiA:
21.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1nbu PROBABLE
DIHYDRONEOPTERIN
ALDOLASE


(Mycobacterium
tuberculosis)
PF02152
(FolB)
4 GLN B 101
GLN B  27
GLY B  14
HIS B  16
None
1.25A 3huoA-1nbuB:
0.0
3huoA-1nbuB:
20.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1pk6 COMPLEMENT C1Q
SUBCOMPONENT, A
CHAIN PRECURSOR
COMPLEMENT C1Q
SUBCOMPONENT, C
CHAIN PRECURSOR


(Homo sapiens;
Homo sapiens)
PF00386
(C1q)
PF00386
(C1q)
4 GLN A 177
GLN C 173
GLY C 166
HIS C 167
CA  B   1 (-3.2A)
CA  B   1 ( 4.7A)
None
None
1.39A 3huoA-1pk6A:
0.2
3huoA-1pk6A:
17.81
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qni NITROUS-OXIDE
REDUCTASE


(Marinobacter
hydrocarbonoclasticus)
no annotation 4 GLN A 371
GLN A 415
GLY A 430
HIS A 428
None
1.42A 3huoA-1qniA:
0.0
3huoA-1qniA:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1r4n AMYLOID BETA
PRECURSOR
PROTEIN-BINDING
PROTEIN 1


(Homo sapiens)
PF00899
(ThiF)
4 GLN A  16
GLN A  25
GLY A  21
HIS A  23
None
1.47A 3huoA-1r4nA:
0.0
3huoA-1r4nA:
19.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1uru AMPHIPHYSIN

(Drosophila
melanogaster)
PF03114
(BAR)
4 GLN A 174
GLN A 148
GLY A 147
HIS A 150
None
1.44A 3huoA-1uruA:
undetectable
3huoA-1uruA:
23.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yif BETA-1,4-XYLOSIDASE

(Bacillus
subtilis)
PF04616
(Glyco_hydro_43)
4 GLN A 421
GLN A 514
GLY A 367
HIS A 368
None
1.15A 3huoA-1yifA:
0.0
3huoA-1yifA:
18.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2nlz CEPHALOSPORIN
ACYLASE


(Bacillus
halodurans)
PF01019
(G_glu_transpept)
4 GLN A 472
GLN A 446
GLY A 447
HIS A 448
None
1.11A 3huoA-2nlzA:
0.0
3huoA-2nlzA:
20.26
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yeq ALKALINE PHOSPHATASE
D


(Bacillus
subtilis)
PF09423
(PhoD)
PF16655
(PhoD_N)
4 GLN A 330
GLN A 331
GLY A 150
HIS A 148
None
1.41A 3huoA-2yeqA:
undetectable
3huoA-2yeqA:
21.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e9y ACETOLACTATE
SYNTHASE,
CHLOROPLASTIC


(Arabidopsis
thaliana)
PF00205
(TPP_enzyme_M)
PF02775
(TPP_enzyme_C)
PF02776
(TPP_enzyme_N)
4 GLN A 573
GLN A 487
GLY A 486
HIS A 488
None
TDM  A 700 (-4.9A)
TDM  A 700 (-3.4A)
TDM  A 700 (-4.1A)
1.10A 3huoA-3e9yA:
undetectable
3huoA-3e9yA:
19.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3k30 HISTAMINE
DEHYDROGENASE


(Pimelobacter
simplex)
PF00724
(Oxidored_FMN)
PF07992
(Pyr_redox_2)
4 GLN A 574
GLN A 559
GLY A 557
HIS A 533
None
1.44A 3huoA-3k30A:
undetectable
3huoA-3k30A:
16.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mw3 NEUREXIN-2-BETA

(Rattus
norvegicus)
PF02210
(Laminin_G_2)
4 GLN A 123
GLN A 257
GLY A  95
HIS A 286
None
1.45A 3huoA-3mw3A:
undetectable
3huoA-3mw3A:
23.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3qh4 ESTERASE LIPW

(Mycobacterium
marinum)
PF07859
(Abhydrolase_3)
4 GLN A 103
GLN A 303
GLY A 304
HIS A 305
None
1.18A 3huoA-3qh4A:
undetectable
3huoA-3qh4A:
23.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bed HEMOCYANIN KLH1

(Megathura
crenulata)
PF00264
(Tyrosinase)
PF14830
(Haemocyan_bet_s)
4 GLN B2415
GLN B2400
GLY B2413
HIS B2411
None
1.41A 3huoA-4bedB:
undetectable
3huoA-4bedB:
9.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4bwr PROTEIN
CORRESPONDING TO
LOCUS C5321 FROM
CFT073 E.COLI STRAIN


(Escherichia
coli)
PF08238
(Sel1)
4 GLN A 225
GLN A 199
GLY A 198
HIS A 201
None
1.44A 3huoA-4bwrA:
undetectable
3huoA-4bwrA:
22.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4el8 GLYCOSIDE HYDROLASE
FAMILY 48


(Caldicellulosiruptor
bescii)
PF02011
(Glyco_hydro_48)
4 GLN A 357
GLN A 325
GLY A 323
HIS A 321
None
1.41A 3huoA-4el8A:
undetectable
3huoA-4el8A:
17.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fye SIDF, INHIBITOR OF
GROWTH FAMILY,
MEMBER 3


(Legionella
pneumophila)
no annotation 4 GLN A 657
GLN A 703
GLY A 716
HIS A 707
None
1.46A 3huoA-4fyeA:
undetectable
3huoA-4fyeA:
15.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4hb4 EXPORTIN-1

(Saccharomyces
cerevisiae)
PF03810
(IBN_N)
PF08389
(Xpo1)
PF08767
(CRM1_C)
4 GLN C 640
GLN C 592
GLY C 590
HIS C 588
None
1.36A 3huoA-4hb4C:
undetectable
3huoA-4hb4C:
13.04
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4l37 SILKWORM STORAGE
PROTEIN


(Bombyx mori)
PF00372
(Hemocyanin_M)
PF03722
(Hemocyanin_N)
PF03723
(Hemocyanin_C)
4 GLN A 326
GLN A 327
GLY A 328
HIS A 329
None
1.42A 3huoA-4l37A:
undetectable
3huoA-4l37A:
16.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4m2g L-ARGININE
BETA-HYDROXYLASE


(Streptomyces
lavendulae)
PF02668
(TauD)
4 GLN A  81
GLN A 290
GLY A 291
HIS A  77
None
1.24A 3huoA-4m2gA:
undetectable
3huoA-4m2gA:
22.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4xwl EXOGLUCANASE S

(Clostridium
cellulovorans)
PF02011
(Glyco_hydro_48)
4 GLN A 348
GLN A 316
GLY A 314
HIS A 312
None
1.46A 3huoA-4xwlA:
undetectable
3huoA-4xwlA:
15.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bv9 CELLULOSE
1,4-BETA-CELLOBIOSID
ASE


(Bacillus
pumilus)
PF02011
(Glyco_hydro_48)
4 GLN A 356
GLN A 323
GLY A 321
HIS A 319
None
1.48A 3huoA-5bv9A:
undetectable
3huoA-5bv9A:
15.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5c92 KELCH
DOMAIN-CONTAINING
PROTEIN


(Colletotrichum
graminicola)
PF01344
(Kelch_1)
PF09118
(DUF1929)
4 GLN A 298
GLN A 309
GLY A 295
HIS A 328
None
1.42A 3huoA-5c92A:
undetectable
3huoA-5c92A:
21.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5czy LEGIONELLA EFFECTOR
LEGAS4


(Legionella
pneumophila)
PF00023
(Ank)
PF00856
(SET)
4 GLN A 199
GLN A 363
GLY A 368
HIS A 369
None
1.21A 3huoA-5czyA:
undetectable
3huoA-5czyA:
19.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hkj COMPLEMENT C1Q
SUBCOMPONENT SUBUNIT
A,COMPLEMENT C1Q
SUBCOMPONENT SUBUNIT
C,COMPLEMENT C1Q
SUBCOMPONENT SUBUNIT
B


(Homo sapiens)
PF00386
(C1q)
4 GLN A  90
GLN A 226
GLY A 219
HIS A 220
CA  A 502 (-3.0A)
CA  A 502 ( 4.7A)
None
None
1.31A 3huoA-5hkjA:
undetectable
3huoA-5hkjA:
20.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jbg LGP2

(Gallus gallus)
PF00271
(Helicase_C)
PF04851
(ResIII)
PF11648
(RIG-I_C-RD)
4 GLN A 357
GLN A 394
GLY A 393
HIS A 395
None
1.43A 3huoA-5jbgA:
undetectable
3huoA-5jbgA:
16.84
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vni PROTEIN TRANSPORT
PROTEIN SEC24A


(Homo sapiens)
PF00626
(Gelsolin)
PF04810
(zf-Sec23_Sec24)
PF04811
(Sec23_trunk)
PF04815
(Sec23_helical)
PF08033
(Sec23_BS)
4 GLN B 929
GLN B 933
GLY B 784
HIS B 412
None
1.20A 3huoA-5vniB:
undetectable
3huoA-5vniB:
16.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yj6 DOCKERIN TYPE I
REPEAT-CONTAINING
PROTEIN


(Ruminiclostridium
thermocellum)
no annotation 4 GLN A 384
GLN A 352
GLY A 350
HIS A 348
None
1.48A 3huoA-5yj6A:
undetectable
3huoA-5yj6A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6c49 ALCOHOL
DEHYDROGENASE


(Acinetobacter
baumannii)
no annotation 4 GLN A 107
GLN A 134
GLY A 132
HIS A  31
None
1.41A 3huoA-6c49A:
undetectable
3huoA-6c49A:
undetectable