SIMILAR PATTERNS OF AMINO ACIDS FOR 3HTH_B_PRLB201_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gh6 RETINOBLASTOMA-ASSOC
IATED PROTEIN

(Homo sapiens) 		PF01857
(RB_B)
PF01858
(RB_A) 		5 LEU B 561
GLU B 737
TYR B 749
LEU B 564
ASP B 697
 None
 1.21A 3hthB-1gh6B:
0.0		 3hthB-1gh6B:
20.35
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kwg BETA-GALACTOSIDASE

(Thermus
thermophilus) 		PF02449
(Glyco_hydro_42)
PF08532
(Glyco_hydro_42M)
PF08533
(Glyco_hydro_42C) 		5 VAL A 120
LEU A  69
TRP A  50
LEU A  53
ASP A  54
 None
 1.18A 3hthB-1kwgA:
1.4		 3hthB-1kwgA:
17.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1tez DEOXYRIBODIPYRIMIDIN
E PHOTOLYASE

(Synechococcus
elongatus) 		PF00875
(DNA_photolyase)
PF03441
(FAD_binding_7) 		5 LEU A  55
GLU A 103
TYR A 105
LEU A  42
ASP A  38
 HDF  A5486 (-4.7A)
HDF  A5486 (-3.7A)
None
HDF  A5486 (-4.2A)
None
 1.29A 3hthB-1tezA:
0.0		 3hthB-1tezA:
17.22
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1y8a HYPOTHETICAL PROTEIN
AF1437

(Archaeoglobus
fulgidus) 		no annotation 5 VAL A 171
LEU A 162
TYR A  49
LEU A  33
ASP A  37
 None
 1.03A 3hthB-1y8aA:
0.0		 3hthB-1y8aA:
25.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qjo BIFUNCTIONAL NMN
ADENYLYLTRANSFERASE/
NUDIX HYDROLASE

(Synechocystis
sp. PCC 6803) 		PF00293
(NUDIX)
PF01467
(CTP_transf_like) 		5 VAL A 108
TYR A 118
TRP A  88
LEU A  89
ASP A  85
 None
NAD  A 601 (-4.8A)
NAD  A 601 (-3.4A)
None
NAD  A 601 (-3.8A)
 1.45A 3hthB-2qjoA:
0.0		 3hthB-2qjoA:
24.92
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3iuv UNCHARACTERIZED TETR
FAMILY PROTEIN

(Streptomyces
coelicolor) 		PF00440
(TetR_N) 		5 VAL A  70
LEU A  92
TYR A 107
LEU A 150
ASP A 151
 None
 0.94A 3hthB-3iuvA:
22.8		 3hthB-3iuvA:
92.13
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lfu DNA HELICASE II

(Escherichia
coli) 		PF00580
(UvrD-helicase)
PF13361
(UvrD_C) 		5 LEU A 304
GLU A 298
TYR A 600
LEU A  28
ASP A 248
 None
 1.48A 3hthB-3lfuA:
0.0		 3hthB-3lfuA:
15.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pz9 MANNAN
ENDO-1,4-BETA-MANNOS
IDASE. GLYCOSYL
HYDROLASE FAMILY 5

(Thermotoga
petrophila) 		PF00150
(Cellulase) 		5 VAL A 313
LEU A 342
TYR A 389
LEU A 338
ASP A 337
 None
 1.44A 3hthB-3pz9A:
1.1		 3hthB-3pz9A:
23.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3uc0 ENVELOPE PROTEIN
HEAVY CHAIN,
MONOCLONAL ANTIBODY
5H2

(Dengue virus;
Pan troglodytes) 		PF00869
(Flavi_glycoprot)
PF07654
(C1-set)
PF07686
(V-set) 		5 VAL A 139
LEU A 181
TYR H  33
TYR H  50
LEU A 175
 None
 1.37A 3hthB-3uc0A:
undetectable		 3hthB-3uc0A:
20.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ea1 DEHYDROSQUALENE
SYNTHASE

(Staphylococcus
aureus) 		PF00494
(SQS_PSY) 		5 VAL A 173
LEU A 166
TYR A 214
LEU A 126
ASP A 123
 None
 1.23A 3hthB-4ea1A:
1.0		 3hthB-4ea1A:
22.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fgm AMINOPEPTIDASE N
FAMILY PROTEIN

(Idiomarina
loihiensis) 		PF05299
(Peptidase_M61)
PF13180
(PDZ_2) 		5 VAL A 463
TYR A 312
TYR A 316
LEU A 389
ASP A 388
 None
 1.34A 3hthB-4fgmA:
undetectable		 3hthB-4fgmA:
16.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fgm AMINOPEPTIDASE N
FAMILY PROTEIN

(Idiomarina
loihiensis) 		PF05299
(Peptidase_M61)
PF13180
(PDZ_2) 		5 VAL A 463
TYR A 312
TYR A 316
TRP A 584
ASP A 388
 None
 1.20A 3hthB-4fgmA:
undetectable		 3hthB-4fgmA:
16.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4l22 PHOSPHORYLASE

(Streptococcus
mutans) 		PF00343
(Phosphorylase) 		5 VAL A 308
LEU A 266
GLU A 288
TYR A 166
ASP A 257
 None
 1.32A 3hthB-4l22A:
1.3		 3hthB-4l22A:
14.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5inr DIPEPTIDASE

(Lactobacillus
farciminis) 		PF03577
(Peptidase_C69) 		5 VAL A 132
LEU A 142
TYR A  53
LEU A 124
ASP A 123
 None
 1.40A 3hthB-5inrA:
0.4		 3hthB-5inrA:
18.28