SIMILAR PATTERNS OF AMINO ACIDS FOR 3H52_D_486D2_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1nzy 4-CHLOROBENZOYL
COENZYME A
DEHALOGENASE

(Pseudomonas sp.
CBS3) 		PF00378
(ECH_1) 		4 LEU B  39
ASN B  40
TRP B  88
TYR B   2
 None
 1.41A 3h52D-1nzyB:
0.0		 3h52D-1nzyB:
20.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gu0 NONSTRUCTURAL
PROTEIN 2

(Rotavirus C) 		PF02509
(Rota_NS35) 		4 ASN A 189
TRP A 223
MET A 259
TYR A 159
 None
 1.42A 3h52D-2gu0A:
0.0		 3h52D-2gu0A:
22.70
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h9c METHIONYL-TRNA
SYNTHETASE

(Escherichia
coli) 		PF09334
(tRNA-synt_1g) 		4 LEU A 392
ASN A 396
TRP A 461
TYR A 454
 None
 1.43A 3h52D-3h9cA:
0.0		 3h52D-3h9cA:
18.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hl1 FERRITIN LIKE
PROTEIN

(Caulobacter
vibrioides) 		PF12902
(Ferritin-like) 		4 LEU A  73
ASN A 280
MET A 168
TYR A  69
 None
 1.45A 3h52D-3hl1A:
0.9		 3h52D-3hl1A:
21.36
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3kba PROGESTERONE
RECEPTOR

(Homo sapiens) 		PF00104
(Hormone_recep) 		4 LEU A 718
ASN A 719
MET A 759
TYR A 890
 WOW  A   1 (-4.2A)
WOW  A   1 (-3.3A)
WOW  A   1 (-3.7A)
WOW  A   1 (-3.9A)
 0.86A 3h52D-3kbaA:
27.7		 3h52D-3kbaA:
53.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mwt NUCLEOPROTEIN

(Lassa
mammarenavirus) 		PF00843
(Arena_nucleocap)
PF17290
(Arena_ncap_C) 		4 LEU A  70
ASN A  71
TRP A 164
MET A  54
 None
 1.38A 3h52D-3mwtA:
0.0		 3h52D-3mwtA:
22.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3o0d TRIACYLGLYCEROL
LIPASE

(Yarrowia
lipolytica) 		PF01764
(Lipase_3)
PF03893
(Lipase3_N) 		4 LEU A 175
ASN A 178
TRP A 200
TYR A 133
 NAG  A 302 (-4.8A)
NAG  A 302 (-3.4A)
None
None
 1.11A 3h52D-3o0dA:
0.0		 3h52D-3o0dA:
20.78
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5uc1 GLUCOCORTICOID
RECEPTOR

(Heterocephalus
glaber) 		no annotation 4 LEU A 559
ASN A 560
TRP A 596
MET A 600
 486  A 801 (-4.7A)
486  A 801 (-4.2A)
None
None
 0.60A 3h52D-5uc1A:
21.1		 3h52D-5uc1A:
87.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5vf4 UNCHARACTERIZED
PROTEIN

(Thermus
aquaticus) 		PF03781
(FGE-sulfatase) 		4 LEU A 319
ASN A 114
TRP A 234
TYR A 255
 None
 1.46A 3h52D-5vf4A:
0.0		 3h52D-5vf4A:
21.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xe3 ENDORIBONUCLEASE
MAZF4

(Mycobacterium
tuberculosis) 		no annotation 4 LEU C   5
ASN C  30
MET C  89
TYR C  10
 None
 1.44A 3h52D-5xe3C:
undetectable		 3h52D-5xe3C:
16.14