SIMILAR PATTERNS OF AMINO ACIDS FOR 3FSU_E_C2FE995_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1b5t PROTEIN
(METHYLENETETRAHYDRO
FOLATE REDUCTASE)

(Escherichia
coli) 		PF02219
(MTHFR) 		5 GLN A 183
SER A 215
THR A 227
TYR A 275
ARG A 279
 FAD  A 395 ( 4.4A)
None
None
None
None
 0.78A 3fsuE-1b5tA:
42.2		 3fsuE-1b5tA:
98.91
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1b5t PROTEIN
(METHYLENETETRAHYDRO
FOLATE REDUCTASE)

(Escherichia
coli) 		PF02219
(MTHFR) 		7 THR A  59
ASP A 120
GLN A 183
SER A 215
THR A 227
TYR A 275
LEU A 277
 FAD  A 395 (-3.7A)
FAD  A 395 (-3.9A)
FAD  A 395 ( 4.4A)
None
None
None
None
 0.40A 3fsuE-1b5tA:
42.2		 3fsuE-1b5tA:
98.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1fsk ANTIBODY HEAVY CHAIN
FAB

(Mus musculus) 		PF07654
(C1-set)
PF07686
(V-set) 		5 GLN C   6
GLN C  82
LEU C  20
THR C 112
LEU C  70
 None
 1.40A 3fsuE-1fskC:
0.0		 3fsuE-1fskC:
19.75
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1jnh MONOCLONAL
ANTI-ESTRADIOL
10G6D6 FAB HEAVY
CHAIN

(Mus musculus) 		PF07654
(C1-set)
PF07686
(V-set) 		5 GLN B   6
GLN B  82
LEU B  20
THR B 113
LEU B  70
 None
 1.46A 3fsuE-1jnhB:
undetectable		 3fsuE-1jnhB:
21.15
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1v93 5,10-METHYLENETETRAH
YDROFOLATE REDUCTASE

(Thermus
thermophilus) 		PF02219
(MTHFR) 		5 THR A  49
ASP A 109
GLN A 180
SER A 213
TYR A 272
 FAD  A 300 (-3.8A)
FAD  A 300 (-3.3A)
FAD  A 300 (-4.3A)
None
None
 1.18A 3fsuE-1v93A:
35.2		 3fsuE-1v93A:
35.67
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1v93 5,10-METHYLENETETRAH
YDROFOLATE REDUCTASE

(Thermus
thermophilus) 		PF02219
(MTHFR) 		5 THR A  49
ASP A 109
GLN A 180
TYR A 272
LEU A 274
 FAD  A 300 (-3.8A)
FAD  A 300 (-3.3A)
FAD  A 300 (-4.3A)
None
None
 0.75A 3fsuE-1v93A:
35.2		 3fsuE-1v93A:
35.67
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1yy3 S-ADENOSYLMETHIONINE
:TRNA
RIBOSYLTRANSFERASE-I
SOMERASE

(Bacillus
subtilis) 		PF02547
(Queuosine_synth) 		5 GLN A 133
LEU A  81
THR A  94
LEU A 115
ARG A 114
 None
 1.44A 3fsuE-1yy3A:
0.6		 3fsuE-1yy3A:
19.83
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1z5x ECDYSONE RECEPTOR
LIGAND BINDING
DOMAIN

(Bemisia tabaci) 		PF00104
(Hormone_recep) 		5 GLN E 195
GLN E 184
LEU E 357
LEU E 191
ARG E 190
 None
 1.31A 3fsuE-1z5xE:
undetectable		 3fsuE-1z5xE:
23.89
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2rf7 CYTOCHROME C-552

(Escherichia
coli) 		PF02335
(Cytochrom_C552) 		5 THR A 313
ASP A 300
GLN A  62
SER A 387
THR A  59
 None
None
HEC  A   3 (-3.8A)
None
None
 1.35A 3fsuE-2rf7A:
0.0		 3fsuE-2rf7A:
21.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vrc TRIPHENYLMETHANE
REDUCTASE

(Citrobacter sp.
MY-5) 		PF05368
(NmrA) 		5 THR A   6
LEU A 138
THR A 136
LEU A  12
ARG A 175
 None
 1.39A 3fsuE-2vrcA:
0.2		 3fsuE-2vrcA:
23.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vwe ANTI-VEGF-B
MONOCLONAL ANTIBODY

(Mus musculus) 		PF07654
(C1-set)
PF07686
(V-set) 		5 GLN E   6
GLN E  81
LEU E  20
THR E 107
LEU E  69
 None
 1.35A 3fsuE-2vweE:
undetectable		 3fsuE-2vweE:
19.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2y8n 4-HYDROXYPHENYLACETA
TE DECARBOXYLASE
LARGE SUBUNIT

(Clostridium
scatologenes) 		PF01228
(Gly_radical)
PF02901
(PFL-like) 		5 GLN A 356
THR A 422
LEU A 377
TYR A 359
LEU A 355
 None
 1.22A 3fsuE-2y8nA:
0.0		 3fsuE-2y8nA:
14.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ct9 ACETYLORNITHINE
DEACETYLASE

(Bacteroides
thetaiotaomicron) 		PF01546
(Peptidase_M20)
PF07687
(M20_dimer) 		5 THR A  47
LEU A  15
TYR A 130
LEU A 117
ARG A 121
 None
 1.27A 3fsuE-3ct9A:
undetectable		 3fsuE-3ct9A:
24.07
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3dzu RETINOIC ACID
RECEPTOR RXR-ALPHA
PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA

(Homo sapiens;
Homo sapiens) 		PF00104
(Hormone_recep)
PF00105
(zf-C4)
PF00104
(Hormone_recep)
PF00105
(zf-C4) 		5 GLN D 437
LEU A 422
THR D 440
TYR A 397
LEU A 400
 None
 1.10A 3fsuE-3dzuD:
undetectable		 3fsuE-3dzuD:
21.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3igf ALL4481 PROTEIN

(Nostoc sp. PCC
7120) 		PF02374
(ArsA_ATPase) 		5 GLN A  66
LEU A  38
THR A 133
LEU A  72
ARG A  75
 None
 1.32A 3fsuE-3igfA:
2.3		 3fsuE-3igfA:
24.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3o0y LIPOPROTEIN

(Colwellia
psychrerythraea) 		PF05960
(DUF885) 		5 GLN A 173
GLN A 156
LEU A  48
THR A  51
LEU A 177
 None
 1.40A 3fsuE-3o0yA:
undetectable		 3fsuE-3o0yA:
18.92
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3pb0 DIHYDRODIPICOLINATE
SYNTHASE

(Thermotoga
maritima) 		PF00701
(DHDPS) 		5 GLN A  30
THR A   7
GLN A 216
LEU A 242
LEU A 259
 None
 1.47A 3fsuE-3pb0A:
11.4		 3fsuE-3pb0A:
23.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tt1 MOUSE MONOCLONAL
1GG2A FAB FRAGMENT,
KAPPA LIGHT CHAIN

(Mus musculus) 		PF07654
(C1-set)
PF07686
(V-set) 		5 GLN H   6
GLN H  82
LEU H  20
THR H 115
LEU H  70
 None
 1.47A 3fsuE-3tt1H:
undetectable		 3fsuE-3tt1H:
20.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ain GLYCINE BETAINE
TRANSPORTER BETP

(Corynebacterium
glutamicum) 		PF02028
(BCCT) 		5 THR A 185
SER A 429
GLN A 425
LEU A 163
ARG A 167
 None
 1.46A 3fsuE-4ainA:
undetectable		 3fsuE-4ainA:
20.63
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4chg PROBABLE
RIBONUCLEASE VAPC15
ANTITOXIN VAPB15

(Mycobacterium
tuberculosis;
Mycobacterium
tuberculosis) 		PF01850
(PIN)
PF09957
(VapB_antitoxin) 		5 ASP A  30
SER G  57
GLN G  55
LEU G  52
LEU A  59
 None
 1.49A 3fsuE-4chgA:
undetectable		 3fsuE-4chgA:
18.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ipn 6-PHOSPHO-BETA-GLUCO
SIDASE

(Streptococcus
pneumoniae) 		PF00232
(Glyco_hydro_1) 		5 ASP B  51
SER B  86
GLN B  33
THR B  45
ARG B  87
 None
 1.44A 3fsuE-4ipnB:
3.6		 3fsuE-4ipnB:
23.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4kt3 PUTATIVE LIPOPROTEIN

(Pseudomonas
protegens) 		no annotation 5 GLN B  45
LEU B  47
THR B 111
TYR B  56
LEU B  58
 None
 1.27A 3fsuE-4kt3B:
undetectable		 3fsuE-4kt3B:
20.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4yqx JES6-1 VH DOMAIN

(Rattus
norvegicus) 		PF07686
(V-set) 		5 GLN H   9
GLN H  85
LEU H  23
THR H 118
LEU H  73
 None
 1.46A 3fsuE-4yqxH:
undetectable		 3fsuE-4yqxH:
18.73
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5irm UNCHARACTERIZED
PROTEIN

(Oryctolagus
cuniculus) 		PF05729
(NACHT)
PF13516
(LRR_6) 		5 THR A 491
GLN A 674
LEU A 597
LEU A 662
ARG A 684
 None
 1.48A 3fsuE-5irmA:
undetectable		 3fsuE-5irmA:
16.97
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5k2y PROBABLE PERIPLASMIC
SUGAR-BINDING
LIPOPROTEIN USPC

(Mycobacterium
tuberculosis) 		PF01547
(SBP_bac_1) 		5 ASP A 178
GLN A 166
LEU A 170
TYR A 211
LEU A 187
 None
 1.42A 3fsuE-5k2yA:
undetectable		 3fsuE-5k2yA:
23.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5u8s CELL DIVISION
CONTROL PROTEIN 45

(Saccharomyces
cerevisiae) 		PF02724
(CDC45) 		5 GLN E 141
SER E  32
LEU E  45
TYR E 121
LEU E 123
 None
 1.36A 3fsuE-5u8sE:
undetectable		 3fsuE-5u8sE:
20.06
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5ume 5,10-METHYLENETETRAH
YDROFOLATE REDUCTASE

(Haemophilus
influenzae) 		PF02219
(MTHFR) 		5 THR A  57
GLN A 181
THR A 225
TYR A 273
LEU A 275
 FAD  A 300 (-4.4A)
ACY  A 302 ( 3.9A)
None
ACY  A 302 ( 4.0A)
None
 0.42A 3fsuE-5umeA:
40.7		 3fsuE-5umeA:
72.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5veu CYTOCHROME P450 3A5

(Homo sapiens) 		no annotation 5 THR A 136
SER A 281
GLN A 279
LEU A 132
ARG A 128
 None
 1.48A 3fsuE-5veuA:
undetectable		 3fsuE-5veuA:
20.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6ci7 YCAO

(Methanopyrus
kandleri) 		no annotation 5 THR A  20
SER A 239
LEU A 314
THR A   3
ARG A 248
 ACP  A 500 ( 3.9A)
None
None
None
ACP  A 500 (-3.1A)
 1.39A 3fsuE-6ci7A:
undetectable		 3fsuE-6ci7A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6dxo RNA POLYMERASE
ECF-SUBFAMILY SIGMA
FACTOR
BLDN

(Streptomyces
venezuelae;
Streptomyces
venezuelae) 		no annotation
no annotation 		5 GLN A 130
THR A 134
GLN D  57
LEU D  58
THR A  44
 None
 1.35A 3fsuE-6dxoA:
undetectable		 3fsuE-6dxoA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6fwv -

(-) 		no annotation 5 GLN A  73
LEU A  67
THR A 238
LEU A 121
ARG A 120
 None
 1.44A 3fsuE-6fwvA:
undetectable		 3fsuE-6fwvA:
undetectable