SIMILAR PATTERNS OF AMINO ACIDS FOR 3EM0_A_CHDA150

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1bkh MUCONATE LACTONIZING
ENZYME

(Pseudomonas
putida) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		5 THR A 326
VAL A 138
PHE A 316
ILE A 274
THR A  52
 None
 1.39A 3em0A-1bkhA:
undetectable		 3em0A-1bkhA:
18.44
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1dxl DIHYDROLIPOAMIDE
DEHYDROGENASE

(Pisum sativum) 		PF02852
(Pyr_redox_dim)
PF07992
(Pyr_redox_2) 		5 ASN A   7
THR A  32
VAL A 111
ILE A 126
THR A 136
 None
 1.41A 3em0A-1dxlA:
1.4		 3em0A-1dxlA:
15.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ebb PHOSPHATASE

(Geobacillus
stearothermophilus) 		PF00300
(His_Phos_1) 		5 THR A   8
VAL A 181
VAL A 134
ILE A 137
THR A   3
 None
 1.48A 3em0A-1ebbA:
0.2		 3em0A-1ebbA:
18.85
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kcw CERULOPLASMIN

(Homo sapiens) 		PF00394
(Cu-oxidase)
PF07731
(Cu-oxidase_2)
PF07732
(Cu-oxidase_3) 		5 ASN A 244
MET A 201
PHE A 267
ILE A 175
TYR A 160
 None
 0.85A 3em0A-1kcwA:
0.0		 3em0A-1kcwA:
8.79
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1o1u GASTROTROPIN

(Homo sapiens) 		PF14651
(Lipocalin_7) 		5 TRP A  49
GLN A  51
VAL A  83
TYR A  97
GLN A  99
 None
 1.01A 3em0A-1o1uA:
16.3		 3em0A-1o1uA:
56.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1sde D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE

(Streptomyces
sp. R61) 		PF00144
(Beta-lactamase) 		5 MET A 119
THR A 123
VAL A 124
GLN A 229
THR A 230
 None
 1.19A 3em0A-1sdeA:
0.0		 3em0A-1sdeA:
19.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1w36 EXODEOXYRIBONUCLEASE
V GAMMA CHAIN

(Escherichia
coli) 		PF04257
(Exonuc_V_gamma) 		5 ASN C 681
VAL C 748
ILE C 729
TYR C 728
THR C 781
 None
 1.28A 3em0A-1w36C:
0.0		 3em0A-1w36C:
8.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1zv9 CELLULOSOMAL
SCAFFOLDIN ADAPTOR
PROTEIN B

(Acetivibrio
cellulolyticus) 		PF00963
(Cohesin) 		5 MET A  41
THR A 143
VAL A 144
PHE A 130
VAL A 116
 None
 1.26A 3em0A-1zv9A:
0.0		 3em0A-1zv9A:
22.91
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2lba BABP PROTEIN

(Gallus gallus) 		PF14651
(Lipocalin_7) 		5 MET A  71
THR A  73
PHE A  79
VAL A  83
THR A 100
 CHO  A 201 (-2.4A)
CHO  A 201 (-2.8A)
CHO  A 201 (-3.5A)
CHO  A 201 ( 4.0A)
None
 1.28A 3em0A-2lbaA:
19.2		 3em0A-2lbaA:
60.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2lba BABP PROTEIN

(Gallus gallus) 		PF14651
(Lipocalin_7) 		8 TRP A  49
GLN A  51
ASN A  61
MET A  71
THR A  73
PHE A  79
VAL A  83
TYR A  97
 CHO  A 201 (-2.9A)
CHO  A 201 ( 3.4A)
CHO  A 201 ( 3.5A)
CHO  A 201 (-2.4A)
CHO  A 201 (-2.8A)
CHO  A 201 (-3.5A)
CHO  A 201 ( 4.0A)
CHO  A 201 (-2.6A)
 0.90A 3em0A-2lbaA:
19.2		 3em0A-2lbaA:
60.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2vou 2,6-DIHYDROXYPYRIDIN
E HYDROXYLASE

(Paenarthrobacter
nicotinovorans) 		PF00070
(Pyr_redox) 		5 THR A 138
PHE A 134
VAL A 145
GLN A 131
THR A 129
 None
 1.47A 3em0A-2vouA:
0.8		 3em0A-2vouA:
14.80
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3elz ILEAL BILE
ACID-BINDING PROTEIN

(Danio rerio) 		PF14651
(Lipocalin_7) 		12 TRP A  49
GLN A  51
ASN A  61
MET A  71
THR A  73
VAL A  74
PHE A  79
VAL A  83
ILE A  92
TYR A  97
GLN A  99
THR A 101
 CHD  A 150 (-3.5A)
CHD  A 150 ( 3.7A)
CHD  A 150 ( 4.0A)
CHD  A 150 ( 3.7A)
CHD  A 200 (-3.1A)
CHD  A 200 (-3.7A)
CHD  A 153 ( 4.9A)
CHD  A 150 (-4.4A)
CHD  A 150 (-3.9A)
CHD  A 153 (-4.2A)
CHD  A 150 (-3.3A)
CHD  A 150 (-2.9A)
 0.65A 3em0A-3elzA:
24.6		 3em0A-3elzA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3elz ILEAL BILE
ACID-BINDING PROTEIN

(Danio rerio) 		PF14651
(Lipocalin_7) 		5 VAL A  59
VAL A  83
ILE A  92
GLN A  99
THR A 101
 None
CHD  A 150 (-4.4A)
CHD  A 150 (-3.9A)
CHD  A 150 (-3.3A)
CHD  A 150 (-2.9A)
 1.01A 3em0A-3elzA:
24.6		 3em0A-3elzA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fj4 MUCONATE
CYCLOISOMERASE

(Pseudomonas
protegens) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		5 THR A 328
VAL A 140
PHE A 318
ILE A 276
THR A  54
 None
 1.40A 3em0A-3fj4A:
0.2		 3em0A-3fj4A:
16.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3gtd FUMARATE HYDRATASE
CLASS II

(Rickettsia
prowazekii) 		PF00206
(Lyase_1)
PF10415
(FumaraseC_C) 		5 GLN A 138
VAL A 134
VAL A 250
ILE A  50
THR A 146
 None
 1.29A 3em0A-3gtdA:
undetectable		 3em0A-3gtdA:
14.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h32 FIBRINOGEN ALPHA
CHAIN
FIBRINOGEN BETA
CHAIN

(Homo sapiens;
Homo sapiens) 		PF08702
(Fib_alpha)
PF00147
(Fibrinogen_C)
PF08702
(Fib_alpha) 		5 ASN B 160
THR B 163
VAL A 130
ILE A 133
GLN A 137
 None
 1.49A 3em0A-3h32B:
undetectable		 3em0A-3h32B:
14.19
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3kd4 PUTATIVE PROTEASE

(Parabacteroides
distasonis) 		PF12969
(DUF3857)
PF12970
(DUF3858) 		5 THR A 354
VAL A 355
VAL A 376
ILE A 384
THR A 368
 None
 1.14A 3em0A-3kd4A:
0.5		 3em0A-3kd4A:
12.52
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3l8q CELLULOSOMAL
SCAFFOLDIN ADAPTOR
PROTEIN B

(Acetivibrio
cellulolyticus) 		PF00963
(Cohesin) 		5 MET A  41
THR A 143
VAL A 144
PHE A 130
VAL A 116
 None
 1.24A 3em0A-3l8qA:
undetectable		 3em0A-3l8qA:
17.34
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3tfj GCVT-LIKE
AMINOMETHYLTRANSFERA
SE PROTEIN

(Candidatus
Pelagibacter
ubique) 		PF01571
(GCV_T)
PF08669
(GCV_T_C) 		5 VAL A  55
VAL A  26
ILE A  21
TYR A 217
GLN A  24
 None
 1.47A 3em0A-3tfjA:
undetectable		 3em0A-3tfjA:
16.80
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3zs6 PERIPLASMIC
OLIGOPEPTIDE-BINDING
PROTEIN

(Burkholderia
pseudomallei) 		PF00496
(SBP_bac_5) 		5 THR A 128
VAL A 127
VAL A 183
ILE A 173
THR A 196
 None
 1.32A 3em0A-3zs6A:
undetectable		 3em0A-3zs6A:
13.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fsj CAPSID PROTEIN BETA

(Flock House
virus) 		PF01829
(Peptidase_A6) 		5 GLN A 274
THR A 199
VAL A 200
VAL A 288
ILE A 259
 None
 1.04A 3em0A-4fsjA:
undetectable		 3em0A-4fsjA:
16.90
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ghk GAMMA-GLUTAMYL
PHOSPHATE REDUCTASE

(Burkholderia
thailandensis) 		PF00171
(Aldedh) 		5 THR A 145
VAL A 178
VAL A 189
ILE A 123
TYR A 124
 None
 1.47A 3em0A-4ghkA:
undetectable		 3em0A-4ghkA:
13.77
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4i97 DELTA CLASS 1
GLUTATHIONE
S-TRANSFERASE

(Scaptomyza
nigrita) 		PF00043
(GST_C)
PF02798
(GST_N) 		5 THR A 191
VAL A 190
VAL A  74
ILE A  23
THR A  80
 None
 1.30A 3em0A-4i97A:
undetectable		 3em0A-4i97A:
18.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4n0q LEU/ILE/VAL-BINDING
PROTEIN HOMOLOG 3

(Brucella
melitensis) 		PF13458
(Peripla_BP_6) 		5 GLN A 146
ASN A 270
THR A 122
PHE A 297
TYR A 224
 None
None
LEU  A 500 (-4.0A)
LEU  A 500 (-4.1A)
LEU  A 500 (-4.8A)
 1.44A 3em0A-4n0qA:
undetectable		 3em0A-4n0qA:
17.56
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pn3 3-HYDROXYACYL-COA
DEHYDROGENASE

(Brucella
melitensis) 		PF00106
(adh_short) 		5 ASN A 145
THR A 172
VAL A 175
VAL A 230
ILE A 233
 None
 1.41A 3em0A-4pn3A:
undetectable		 3em0A-4pn3A:
20.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qnl TAIL FIBER PROTEIN

(Escherichia
virus G7C) 		no annotation 5 THR A 413
VAL A 414
VAL A 399
ILE A 395
TYR A 391
 None
 1.17A 3em0A-4qnlA:
undetectable		 3em0A-4qnlA:
10.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4r9o PUTATIVE ALDO/KETO
REDUCTASE

(Salmonella
enterica) 		PF00248
(Aldo_ket_red) 		5 TRP A 209
GLN A 180
THR A  82
VAL A  81
ILE A  86
 None
 1.18A 3em0A-4r9oA:
undetectable		 3em0A-4r9oA:
16.61
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4v1y ATRAZINE
CHLOROHYDROLASE

(Pseudomonas sp.
ADP) 		PF01979
(Amidohydro_1) 		5 GLN A 298
ASN A  64
VAL A 151
GLN A 273
THR A 241
 None
 1.38A 3em0A-4v1yA:
undetectable		 3em0A-4v1yA:
13.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5cr9 ABC-TYPE
FE3+-HYDROXAMATE
TRANSPORT SYSTEM,
PERIPLASMIC
COMPONENT

(Saccharomonospora
viridis) 		PF01497
(Peripla_BP_2) 		5 GLN A 154
MET A  72
PHE A 181
VAL A  81
ILE A  61
 None
 1.29A 3em0A-5cr9A:
undetectable		 3em0A-5cr9A:
19.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5f7u CYCLOALTERNAN-FORMIN
G ENZYME

(Listeria
monocytogenes) 		PF01055
(Glyco_hydro_31)
PF13802
(Gal_mutarotas_2)
PF16338
(DUF4968)
PF16990
(CBM_35) 		5 GLN A 839
THR A 941
VAL A 942
GLN A 905
THR A 855
 None
 1.45A 3em0A-5f7uA:
0.6		 3em0A-5f7uA:
8.74
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5fsg MALTOSE-BINDING
PERIPLASMIC PROTEIN,
HANTAVIRUS
NUCLEOPROTEIN

(Hantaan
orthohantavirus) 		PF00846
(Hanta_nucleocap)
PF13416
(SBP_bac_8) 		5 GLN A 375
THR A 369
ILE A 381
TYR A 362
GLN A 378
 None
 1.38A 3em0A-5fsgA:
undetectable		 3em0A-5fsgA:
13.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5it0 PHOSPHOSERINE
PHOSPHATASE

(Mycobacterium
avium) 		PF12710
(HAD)
PF13740
(ACT_6) 		5 ASN A 297
VAL A 274
PHE A 225
VAL A 233
ILE A 198
 None
 1.38A 3em0A-5it0A:
undetectable		 3em0A-5it0A:
16.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lac 3CL PROTEASE

(Alphamesonivirus
1) 		PF17222
(Peptidase_C107) 		5 MET A 156
THR A 117
VAL A 116
VAL A  39
ILE A 103
 None
 1.25A 3em0A-5lacA:
undetectable		 3em0A-5lacA:
18.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5lzk PROTEIN FAM83B

(Homo sapiens) 		PF07894
(DUF1669) 		5 VAL A 160
PHE A 188
VAL A 176
ILE A 205
THR A 171
 None
 1.28A 3em0A-5lzkA:
1.2		 3em0A-5lzkA:
23.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5n4l CERULOPLASMIN

(Rattus
norvegicus) 		no annotation 5 ASN A 243
MET A 200
PHE A 266
ILE A 174
TYR A 159
 None
 0.78A 3em0A-5n4lA:
undetectable		 3em0A-5n4lA:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5ofk GLYCOSIDE HYDROLASE
FAMILY 48

(Caldicellulosiruptor
bescii) 		PF00331
(Glyco_hydro_10) 		5 MET A  49
THR A  88
VAL A 137
VAL A  74
ILE A  84
 None
None
None
MPD  A 405 ( 3.5A)
None
 1.14A 3em0A-5ofkA:
undetectable		 3em0A-5ofkA:
16.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5xmd EPOXIDE HYDROLASE A

(Vigna radiata) 		no annotation 5 MET A 129
VAL A 284
VAL A 265
ILE A 271
THR A 259
 None
 1.44A 3em0A-5xmdA:
undetectable		 3em0A-5xmdA:
undetectable