SIMILAR PATTERNS OF AMINO ACIDS FOR 3DZY_D_BRLD478_1

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1j0n XANTHAN LYASE

(Bacillus sp.
GL1) 		PF02278
(Lyase_8)
PF02884
(Lyase_8_C)
PF08124
(Lyase_8_N) 		5 LEU A 575
VAL A 573
LEU A 595
MET A 627
TYR A 452
 None
 1.48A 3dzyD-1j0nA:
0.0		 3dzyD-1j0nA:
19.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1kkr 3-METHYLASPARTATE
AMMONIA-LYASE

(Citrobacter
amalonaticus) 		PF05034
(MAAL_N)
PF07476
(MAAL_C) 		5 SER A 300
HIS A 326
LEU A 270
VAL A 215
LEU A 211
 None
 1.17A 3dzyD-1kkrA:
0.0		 3dzyD-1kkrA:
23.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1l3w EP-CADHERIN

(Xenopus laevis) 		PF00028
(Cadherin) 		5 TYR A 471
LEU A 513
VAL A 511
LEU A 496
MET A 494
 None
 1.22A 3dzyD-1l3wA:
undetectable		 3dzyD-1l3wA:
23.10
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lt3 HEAT-LABILE
ENTEROTOXIN

(Escherichia
coli) 		PF01375
(Enterotoxin_a) 		5 SER A 122
TYR A 214
VAL A  60
MET A  94
TYR A 149
 None
 1.41A 3dzyD-1lt3A:
undetectable		 3dzyD-1lt3A:
18.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1s5f CHOLERA ENTEROTOXIN,
A CHAIN

(Vibrio cholerae) 		PF01375
(Enterotoxin_a) 		5 SER A 122
TYR A 214
VAL A  60
MET A  94
TYR A 149
 None
 1.33A 3dzyD-1s5fA:
undetectable		 3dzyD-1s5fA:
19.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1w9c CRM1 PROTEIN

(Homo sapiens) 		PF08767
(CRM1_C) 		5 LEU A 785
VAL A 826
LEU A 851
MET A 804
TYR A 714
 None
 1.47A 3dzyD-1w9cA:
0.3		 3dzyD-1w9cA:
20.99
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2p54 PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR ALPHA

(Homo sapiens) 		PF00104
(Hormone_recep) 		8 PHE A 273
CYH A 276
SER A 280
LEU A 321
LEU A 344
MET A 355
HIS A 440
TYR A 464
 735  A 469 (-3.7A)
735  A 469 (-2.9A)
735  A 469 (-2.8A)
735  A 469 ( 4.3A)
735  A 469 ( 4.2A)
735  A 469 (-2.9A)
735  A 469 (-4.0A)
735  A 469 (-4.6A)
 0.92A 3dzyD-2p54A:
34.7		 3dzyD-2p54A:
51.06
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2p54 PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR ALPHA

(Homo sapiens) 		PF00104
(Hormone_recep) 		6 PHE A 273
CYH A 276
SER A 280
LEU A 347
HIS A 440
TYR A 464
 735  A 469 (-3.7A)
735  A 469 (-2.9A)
735  A 469 (-2.8A)
None
735  A 469 (-4.0A)
735  A 469 (-4.6A)
 1.42A 3dzyD-2p54A:
34.7		 3dzyD-2p54A:
51.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2r4f 3-HYDROXY-3-METHYLGL
UTARYL-COENZYME A
REDUCTASE

(Homo sapiens) 		PF00368
(HMG-CoA_red) 		5 SER A 565
HIS A 752
LEU A 851
VAL A 717
MET A 728
 None
 1.49A 3dzyD-2r4fA:
0.0		 3dzyD-2r4fA:
20.76
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3b0q PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA

(Homo sapiens) 		PF00104
(Hormone_recep) 		7 PHE A 282
ARG A 288
SER A 289
HIS A 323
TYR A 327
HIS A 449
TYR A 473
 MC5  A   1 (-4.4A)
None
MC5  A   1 (-2.6A)
MC5  A   1 (-3.8A)
None
MC5  A   1 (-3.9A)
MC5  A   1 (-4.9A)
 1.17A 3dzyD-3b0qA:
22.5		 3dzyD-3b0qA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3b0q PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA

(Homo sapiens) 		PF00104
(Hormone_recep) 		11 PHE A 282
CYH A 285
SER A 289
HIS A 323
TYR A 327
LEU A 330
VAL A 339
LEU A 353
MET A 364
HIS A 449
TYR A 473
 MC5  A   1 (-4.4A)
MC5  A   1 (-3.6A)
MC5  A   1 (-2.6A)
MC5  A   1 (-3.8A)
None
MC5  A   1 (-4.4A)
MC5  A   1 (-4.6A)
MC5  A   1 (-4.7A)
MC5  A   1 (-3.7A)
MC5  A   1 (-3.9A)
MC5  A   1 (-4.9A)
 0.62A 3dzyD-3b0qA:
22.5		 3dzyD-3b0qA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3d5f PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR DELTA

(Homo sapiens) 		PF00104
(Hormone_recep) 		6 CYH A 285
HIS A 323
LEU A 330
LEU A 353
HIS A 449
TYR A 473
 L41  A 501 (-3.5A)
L41  A 501 (-3.8A)
L41  A 501 (-4.9A)
None
L41  A 501 (-3.9A)
L41  A 501 (-4.8A)
 0.92A 3dzyD-3d5fA:
33.8		 3dzyD-3d5fA:
50.15
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3d5f PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR DELTA

(Homo sapiens) 		PF00104
(Hormone_recep) 		5 HIS A 323
LEU A 330
VAL A 334
HIS A 449
TYR A 473
 L41  A 501 (-3.8A)
L41  A 501 (-4.9A)
None
L41  A 501 (-3.9A)
L41  A 501 (-4.8A)
 1.36A 3dzyD-3d5fA:
33.8		 3dzyD-3d5fA:
50.15
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3d5f PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR DELTA

(Homo sapiens) 		PF00104
(Hormone_recep) 		6 PHE A 282
CYH A 285
HIS A 323
LEU A 330
LEU A 353
TYR A 473
 L41  A 501 ( 4.9A)
L41  A 501 (-3.5A)
L41  A 501 (-3.8A)
L41  A 501 (-4.9A)
None
L41  A 501 (-4.8A)
 0.92A 3dzyD-3d5fA:
33.8		 3dzyD-3d5fA:
50.15
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3d5f PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR DELTA

(Homo sapiens) 		PF00104
(Hormone_recep) 		5 PHE A 282
CYH A 285
HIS A 323
LEU A 356
TYR A 473
 L41  A 501 ( 4.9A)
L41  A 501 (-3.5A)
L41  A 501 (-3.8A)
None
L41  A 501 (-4.8A)
 1.39A 3dzyD-3d5fA:
33.8		 3dzyD-3d5fA:
50.15
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3dzu PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA

(Homo sapiens) 		PF00104
(Hormone_recep)
PF00105
(zf-C4) 		8 PHE D 282
CYH D 285
HIS D 323
TYR D 327
VAL D 339
LEU D 353
MET D 364
HIS D 449
 None
PLB  D 701 (-3.2A)
None
None
None
None
PLB  D 701 ( 4.8A)
None
 0.96A 3dzyD-3dzuD:
44.4		 3dzyD-3dzuD:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3dzu PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA

(Homo sapiens) 		PF00104
(Hormone_recep)
PF00105
(zf-C4) 		8 PHE D 282
CYH D 285
TYR D 327
LEU D 330
VAL D 339
LEU D 353
MET D 364
HIS D 449
 None
PLB  D 701 (-3.2A)
None
PLB  D 701 ( 4.1A)
None
None
PLB  D 701 ( 4.8A)
None
 0.90A 3dzyD-3dzuD:
44.4		 3dzyD-3dzuD:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3dzu PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA

(Homo sapiens) 		PF00104
(Hormone_recep)
PF00105
(zf-C4) 		8 PHE D 282
HIS D 323
TYR D 327
VAL D 339
LEU D 353
MET D 364
HIS D 449
TYR D 473
 None
None
None
None
None
PLB  D 701 ( 4.8A)
None
None
 0.89A 3dzyD-3dzuD:
44.4		 3dzyD-3dzuD:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3dzu PEROXISOME
PROLIFERATOR-ACTIVAT
ED RECEPTOR GAMMA

(Homo sapiens) 		PF00104
(Hormone_recep)
PF00105
(zf-C4) 		9 PHE D 282
SER D 289
TYR D 327
LEU D 330
VAL D 339
LEU D 353
MET D 364
HIS D 449
TYR D 473
 None
PLB  D 701 ( 3.9A)
None
PLB  D 701 ( 4.1A)
None
None
PLB  D 701 ( 4.8A)
None
None
 0.89A 3dzyD-3dzuD:
44.4		 3dzyD-3dzuD:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3hn8 SYNAPTOTAGMIN-3

(Rattus
norvegicus) 		PF00168
(C2) 		5 HIS A 543
LEU A 433
VAL A 469
LEU A 500
HIS A 547
 ZN  A 700 (-3.1A)
None
None
None
None
 1.48A 3dzyD-3hn8A:
undetectable		 3dzyD-3hn8A:
20.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3j7a 40S RIBOSOMAL
PROTEIN ES10

(Plasmodium
falciparum) 		PF03501
(S10_plectin) 		5 HIS O  45
TYR O  25
LEU O  26
VAL O  66
HIS O  43
 None
 1.31A 3dzyD-3j7aO:
1.5		 3dzyD-3j7aO:
15.64
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3loo ANOPHELES GAMBIAE
ADENOSINE KINASE

(Anopheles
gambiae) 		PF00294
(PfkB) 		5 LEU A  28
VAL A  23
LEU A  52
MET A  48
HIS A  45
 None
 1.23A 3dzyD-3looA:
undetectable		 3dzyD-3looA:
22.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3we5 UBIQUITIN
CONJUGATING ENZYME

(Agrocybe
aegerita) 		PF00179
(UQ_con) 		5 LEU A  97
VAL A 110
LEU A  55
HIS A  91
TYR A 133
 None
 1.45A 3dzyD-3we5A:
undetectable		 3dzyD-3we5A:
18.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4p0v FARNESYL
PYROPHOSPHATE
SYNTHASE

(Homo sapiens) 		PF00348
(polyprenyl_synt) 		5 TYR A 207
LEU A 232
VAL A 340
LEU A  71
MET A 214
 None
 1.16A 3dzyD-4p0vA:
1.9		 3dzyD-4p0vA:
24.15
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ztb PROTEASE NSP2

(Chikungunya
virus) 		PF01707
(Peptidase_C9) 		5 CYH A 285
TYR A 172
LEU A 174
LEU A 253
HIS A 217
 GOL  A 401 ( 4.5A)
None
None
None
None
 1.14A 3dzyD-4ztbA:
undetectable		 3dzyD-4ztbA:
20.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ztb PROTEASE NSP2

(Chikungunya
virus) 		PF01707
(Peptidase_C9) 		5 TYR A 172
LEU A 174
VAL A 158
LEU A 253
HIS A 217
 None
 1.35A 3dzyD-4ztbA:
undetectable		 3dzyD-4ztbA:
20.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5csl ACETYL-COA
CARBOXYLASE

(Saccharomyces
cerevisiae) 		PF00289
(Biotin_carb_N)
PF00364
(Biotin_lipoyl)
PF01039
(Carboxyl_trans)
PF02785
(Biotin_carb_C)
PF02786
(CPSase_L_D2)
PF08326
(ACC_central) 		5 PHE A1469
HIS A1384
VAL A1400
LEU A1440
TYR A1487
 None
 1.29A 3dzyD-5cslA:
undetectable		 3dzyD-5cslA:
11.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5g53 ADENOSINE RECEPTOR
A2A
ENGINEERED DOMAIN OF
HUMAN G ALPHA S LONG
ISOFORM

(Homo sapiens) 		PF00001
(7tm_1)
PF00503
(G-alpha) 		5 PHE A  44
HIS C 387
TYR C 391
LEU A  95
TYR A 112
 None
 1.36A 3dzyD-5g53A:
2.8		 3dzyD-5g53A:
20.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5gyk MITOCHONDRIAL
DISTRIBUTION AND
MORPHOLOGY PROTEIN
12

(Saccharomyces
cerevisiae) 		PF10296
(MMM1) 		5 ARG A 210
LEU A 188
VAL A 194
LEU A 122
HIS A 163
 None
 1.50A 3dzyD-5gykA:
undetectable		 3dzyD-5gykA:
19.91
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hc4 LIPOLYTIC ENZYME

(uncultured
bacterium) 		PF07859
(Abhydrolase_3) 		5 SER A 112
HIS A 106
TYR A 120
LEU A  56
LEU A 239
 GOL  A 401 (-3.6A)
None
None
None
None
 1.37A 3dzyD-5hc4A:
undetectable		 3dzyD-5hc4A:
23.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i6e ACETYL-COA
CARBOXYLASE

(Saccharomyces
cerevisiae) 		PF08326
(ACC_central) 		5 PHE A1469
HIS A1384
VAL A1400
LEU A1440
TYR A1487
 None
 1.30A 3dzyD-5i6eA:
undetectable		 3dzyD-5i6eA:
23.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jk7 PROTEIN VPR
URACIL-DNA
GLYCOSYLASE

(Homo sapiens;
Human
immunodeficiency
virus 1) 		PF00522
(VPR)
PF03167
(UDG) 		5 CYH D 157
LEU D 142
VAL D 140
HIS D 268
TYR F  47
 None
 1.43A 3dzyD-5jk7D:
undetectable		 3dzyD-5jk7D:
19.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5l7k PROTEIN UNC-119
HOMOLOG A

(Homo sapiens) 		PF05351
(GMP_PDE_delta) 		5 PHE A  91
SER A 218
HIS A 165
TYR A 234
TYR A 194
 None
 1.29A 3dzyD-5l7kA:
undetectable		 3dzyD-5l7kA:
19.25
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5x5h CYSTATHIONINE
BETA-LYASES/CYSTATHI
ONINE
GAMMA-SYNTHASES

(Corynebacterium
glutamicum) 		PF01053
(Cys_Met_Meta_PP) 		5 HIS A 261
LEU A 375
VAL A 379
LEU A 272
TYR A 205
 None
 1.38A 3dzyD-5x5hA:
undetectable		 3dzyD-5x5hA:
21.36