SIMILAR PATTERNS OF AMINO ACIDS FOR 3BSZ_F_RTLF178_0

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ck7 PROTEIN (GELATINASE
A)


(Homo sapiens)
PF00040
(fn2)
PF00045
(Hemopexin)
PF00413
(Peptidase_M10)
PF01471
(PG_binding_1)
5 LEU A 420
ALA A 404
PHE A 207
ALA A 192
TYR A 425
None
1.31A 3bszF-1ck7A:
0.2
3bszF-1ck7A:
14.24
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1gll GLYCEROL KINASE

(Escherichia
coli)
no annotation 5 LEU Y  64
ALA Y  18
ALA Y   8
TYR Y   5
GLN Y  73
None
1.24A 3bszF-1gllY:
0.0
3bszF-1gllY:
16.30
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1iiu PLASMA
RETINOL-BINDING
PROTEIN


(Gallus gallus)
PF00061
(Lipocalin)
5 ALA A  57
ALA A  55
MET A  88
HIS A 104
PHE A 135
RTL  A 176 ( 3.8A)
RTL  A 176 ( 3.8A)
RTL  A 176 (-3.4A)
RTL  A 176 ( 4.7A)
RTL  A 176 ( 4.2A)
1.34A 3bszF-1iiuA:
30.0
3bszF-1iiuA:
85.71
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1iiu PLASMA
RETINOL-BINDING
PROTEIN


(Gallus gallus)
PF00061
(Lipocalin)
10 LEU A  37
ALA A  43
PHE A  45
ALA A  55
MET A  73
MET A  88
TYR A  90
GLN A  98
HIS A 104
PHE A 135
RTL  A 176 ( 4.5A)
RTL  A 176 ( 4.1A)
RTL  A 176 ( 4.8A)
RTL  A 176 ( 3.8A)
RTL  A 176 ( 4.0A)
RTL  A 176 (-3.4A)
RTL  A 176 ( 4.0A)
RTL  A 176 (-3.8A)
RTL  A 176 ( 4.7A)
RTL  A 176 ( 4.2A)
0.40A 3bszF-1iiuA:
30.0
3bszF-1iiuA:
85.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1lzx NITRIC-OXIDE
SYNTHASE


(Rattus
norvegicus)
PF02898
(NO_synthase)
5 LEU A 396
ALA A 405
PHE A 704
ALA A 408
PHE A 579
None
None
HEM  A 750 ( 4.6A)
None
None
1.42A 3bszF-1lzxA:
0.0
3bszF-1lzxA:
18.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1m9q ENDOTHELIAL
NITRIC-OXIDE
SYNTHASE


(Homo sapiens)
PF02898
(NO_synthase)
5 LEU A 165
ALA A 174
PHE A 473
ALA A 177
PHE A 348
None
None
HEM  A 901 (-4.4A)
None
None
1.42A 3bszF-1m9qA:
undetectable
3bszF-1m9qA:
17.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ocm MALONAMIDASE E2

(Bradyrhizobium
japonicum)
PF01425
(Amidase)
5 ALA A 167
PHE A 193
ALA A 136
TYR A 162
GLN A 151
None
1.30A 3bszF-1ocmA:
0.0
3bszF-1ocmA:
19.32
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ofe FERREDOXIN-DEPENDENT
GLUTAMATE SYNTHASE 2


(Synechocystis
sp. PCC 6803)
PF00310
(GATase_2)
PF01493
(GXGXG)
PF01645
(Glu_synthase)
PF04898
(Glu_syn_central)
5 LEU A 668
ALA A 449
PHE A 773
ALA A 772
GLN A 675
None
1.16A 3bszF-1ofeA:
undetectable
3bszF-1ofeA:
9.33
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qw5 NITRIC OXIDE
SYNTHASE, INDUCIBLE


(Mus musculus)
PF02898
(NO_synthase)
5 LEU A 303
ALA A 347
ALA A 345
HIS A 224
PHE A 241
None
1.48A 3bszF-1qw5A:
0.0
3bszF-1qw5A:
18.93
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1u2v ACTIN-RELATED
PROTEIN 3


(Bos taurus)
PF00022
(Actin)
5 LEU A 101
ALA A   7
PHE A 390
ALA A 385
PHE A 110
None
1.16A 3bszF-1u2vA:
0.0
3bszF-1u2vA:
19.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2ebd 3-OXOACYL-[ACYL-CARR
IER-PROTEIN]
SYNTHASE 3


(Aquifex
aeolicus)
PF08541
(ACP_syn_III_C)
PF08545
(ACP_syn_III)
5 LEU A  12
ALA A 275
PHE A 258
ALA A 279
GLN A 262
None
1.47A 3bszF-2ebdA:
undetectable
3bszF-2ebdA:
20.57
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2gam BETA-1,6-N-ACETYLGLU
COSAMINYLTRANSFERASE


(Mus musculus)
PF02485
(Branch)
5 ALA A 349
ALA A 351
TYR A 212
GLN A 327
PHE A 336
None
1.06A 3bszF-2gamA:
undetectable
3bszF-2gamA:
19.78
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2wq9 RETINOL-BINDING
PROTEIN 4


(Homo sapiens)
PF00061
(Lipocalin)
6 ALA A  57
ALA A  55
MET A  88
HIS A 104
GLN A 117
PHE A 135
OLA  A1179 ( 3.7A)
OLA  A1179 (-3.5A)
OLA  A1179 ( 3.8A)
OLA  A1179 (-4.5A)
OLA  A1179 (-3.5A)
OLA  A1179 (-4.3A)
1.24A 3bszF-2wq9A:
30.4
3bszF-2wq9A:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2wq9 RETINOL-BINDING
PROTEIN 4


(Homo sapiens)
PF00061
(Lipocalin)
11 LEU A  37
ALA A  43
PHE A  45
ALA A  55
MET A  73
MET A  88
TYR A  90
GLN A  98
HIS A 104
GLN A 117
PHE A 135
OLA  A1179 (-3.4A)
OLA  A1179 ( 4.0A)
OLA  A1179 (-4.6A)
OLA  A1179 (-3.5A)
OLA  A1179 ( 4.9A)
OLA  A1179 ( 3.8A)
OLA  A1179 (-3.7A)
None
OLA  A1179 (-4.5A)
OLA  A1179 (-3.5A)
OLA  A1179 (-4.3A)
0.53A 3bszF-2wq9A:
30.4
3bszF-2wq9A:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2yr5 PRO-ENZYME OF
L-PHENYLALANINE
OXIDASE


(Pseudomonas sp.
P-501)
no annotation 5 LEU A 661
ALA A 155
PHE A 159
ALA A 158
PHE A 144
FAD  A 801 (-3.9A)
None
None
None
FAD  A 801 (-4.3A)
1.46A 3bszF-2yr5A:
undetectable
3bszF-2yr5A:
13.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3e7g NITRIC OXIDE
SYNTHASE, INDUCIBLE


(Homo sapiens)
PF02898
(NO_synthase)
5 LEU A 309
ALA A 353
ALA A 351
HIS A 230
PHE A 247
None
1.39A 3bszF-3e7gA:
undetectable
3bszF-3e7gA:
17.22
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3fmz RETINOL-BINDING
PROTEIN 4


(Homo sapiens)
PF00061
(Lipocalin)
7 ALA A  43
ALA A  55
MET A  73
MET A  88
TYR A  90
GLN A  98
HIS A 104
2T1  A 184 ( 4.7A)
2T1  A 184 ( 4.3A)
2T1  A 184 (-3.6A)
2T1  A 184 (-3.1A)
2T1  A 184 (-3.8A)
2T1  A 184 (-3.0A)
2T1  A 184 (-3.7A)
0.97A 3bszF-3fmzA:
29.2
3bszF-3fmzA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3fmz RETINOL-BINDING
PROTEIN 4


(Homo sapiens)
PF00061
(Lipocalin)
8 ALA A  43
PHE A  45
ALA A  55
MET A  88
TYR A  90
GLN A  98
HIS A 104
GLN A 117
2T1  A 184 ( 4.7A)
None
2T1  A 184 ( 4.3A)
2T1  A 184 (-3.1A)
2T1  A 184 (-3.8A)
2T1  A 184 (-3.0A)
2T1  A 184 (-3.7A)
None
0.76A 3bszF-3fmzA:
29.2
3bszF-3fmzA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3fmz RETINOL-BINDING
PROTEIN 4


(Homo sapiens)
PF00061
(Lipocalin)
6 ALA A  57
ALA A  55
MET A  88
HIS A 104
GLN A 117
PHE A 135
2T1  A 184 (-3.6A)
2T1  A 184 ( 4.3A)
2T1  A 184 (-3.1A)
2T1  A 184 (-3.7A)
None
2T1  A 184 (-4.8A)
1.47A 3bszF-3fmzA:
29.2
3bszF-3fmzA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3fmz RETINOL-BINDING
PROTEIN 4


(Homo sapiens)
PF00061
(Lipocalin)
7 LEU A  37
ALA A  43
ALA A  55
MET A  73
MET A  88
TYR A  90
HIS A 104
2T1  A 184 (-3.6A)
2T1  A 184 ( 4.7A)
2T1  A 184 ( 4.3A)
2T1  A 184 (-3.6A)
2T1  A 184 (-3.1A)
2T1  A 184 (-3.8A)
2T1  A 184 (-3.7A)
0.79A 3bszF-3fmzA:
29.2
3bszF-3fmzA:
100.00
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3fmz RETINOL-BINDING
PROTEIN 4


(Homo sapiens)
PF00061
(Lipocalin)
9 LEU A  37
ALA A  43
PHE A  45
ALA A  55
MET A  88
TYR A  90
HIS A 104
GLN A 117
PHE A 135
2T1  A 184 (-3.6A)
2T1  A 184 ( 4.7A)
None
2T1  A 184 ( 4.3A)
2T1  A 184 (-3.1A)
2T1  A 184 (-3.8A)
2T1  A 184 (-3.7A)
None
2T1  A 184 (-4.8A)
0.55A 3bszF-3fmzA:
29.2
3bszF-3fmzA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3h5q PYRIMIDINE-NUCLEOSID
E PHOSPHORYLASE


(Staphylococcus
aureus)
PF00591
(Glycos_transf_3)
PF02885
(Glycos_trans_3N)
PF07831
(PYNP_C)
5 LEU A 164
ALA A  61
ALA A  57
MET A  50
PHE A  24
None
1.32A 3bszF-3h5qA:
undetectable
3bszF-3h5qA:
16.31
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3lij CALCIUM/CALMODULIN
DEPENDENT PROTEIN
KINASE WITH A KINASE
DOMAIN AND 4
CALMODULIN LIKE EF
HANDS


(Cryptosporidium
parvum)
PF00069
(Pkinase)
PF13499
(EF-hand_7)
5 LEU A 512
ALA A 353
PHE A 475
ALA A  45
GLN A  40
None
1.16A 3bszF-3lijA:
undetectable
3bszF-3lijA:
17.08
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3mzb NICKEL-BINDING
PERIPLASMIC PROTEIN


(Escherichia
coli)
PF00496
(SBP_bac_5)
5 LEU A 458
ALA A 421
PHE A 390
ALA A 417
MET A 411
None
1.45A 3bszF-3mzbA:
undetectable
3bszF-3mzbA:
17.54
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3n0t DIPEPTIDYL PEPTIDASE
2


(Homo sapiens)
PF05577
(Peptidase_S28)
5 LEU A 135
ALA A 169
ALA A 187
TYR A 163
PHE A 399
None
1.27A 3bszF-3n0tA:
undetectable
3bszF-3n0tA:
19.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3n0t DIPEPTIDYL PEPTIDASE
2


(Homo sapiens)
PF05577
(Peptidase_S28)
5 LEU A 135
ALA A 169
PHE A 412
ALA A 184
TYR A 163
None
1.42A 3bszF-3n0tA:
undetectable
3bszF-3n0tA:
19.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3txm 26S PROTEASOME
REGULATORY COMPLEX
SUBUNIT P42B


(Drosophila
melanogaster)
PF01399
(PCI)
5 LEU A 183
ALA A 219
PHE A 232
ALA A 228
GLN A 213
None
1.47A 3bszF-3txmA:
undetectable
3bszF-3txmA:
18.14
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3vkg DYNEIN HEAVY CHAIN,
CYTOPLASMIC


(Dictyostelium
discoideum)
PF03028
(Dynein_heavy)
PF07728
(AAA_5)
PF08393
(DHC_N2)
PF12774
(AAA_6)
PF12775
(AAA_7)
PF12777
(MT)
PF12780
(AAA_8)
PF12781
(AAA_9)
5 LEU A1991
ALA A1932
ALA A1930
MET A1910
TYR A1957
None
1.34A 3bszF-3vkgA:
undetectable
3bszF-3vkgA:
4.23
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4auo INTERSTITIAL
COLLAGENASE


(Homo sapiens)
PF00045
(Hemopexin)
PF00413
(Peptidase_M10)
5 LEU A 216
ALA A 200
PHE A 178
ALA A 163
TYR A 221
None
1.38A 3bszF-4auoA:
undetectable
3bszF-4auoA:
16.53
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4fvl COLLAGENASE 3

(Homo sapiens)
PF00045
(Hemopexin)
PF00413
(Peptidase_M10)
5 LEU A 239
ALA A 223
PHE A 201
ALA A 186
TYR A 244
None
1.30A 3bszF-4fvlA:
undetectable
3bszF-4fvlA:
18.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4g8s NITROREDUCTASE
FAMILY PROTEIN


(Geobacter
sulfurreducens)
PF00881
(Nitroreductase)
5 ALA A 115
PHE A  47
TYR A 108
GLN A 106
PHE A 132
None
None
None
None
FMN  A 300 (-3.7A)
1.45A 3bszF-4g8sA:
undetectable
3bszF-4g8sA:
23.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4knh NUP192P

(Chaetomium
thermophilum)
PF11894
(Nup192)
5 LEU A 497
ALA A 529
ALA A 520
MET A 515
TYR A 475
None
1.21A 3bszF-4knhA:
undetectable
3bszF-4knhA:
11.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oer NIKA PROTEIN

(Brucella suis)
PF00496
(SBP_bac_5)
5 LEU A 456
ALA A 419
PHE A 388
ALA A 415
MET A 409
None
1.42A 3bszF-4oerA:
undetectable
3bszF-4oerA:
19.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4wz9 AGAP004809-PA

(Anopheles
gambiae)
PF01433
(Peptidase_M1)
PF11838
(ERAP1_C)
5 LEU A 412
ALA A 361
PHE A 292
TYR A 354
GLN A 407
None
1.37A 3bszF-4wz9A:
undetectable
3bszF-4wz9A:
10.95
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4zz7 METHYLMALONATE-SEMIA
LDEHYDE
DEHYDROGENASE


(Oceanimonas
doudoroffii)
PF00171
(Aldedh)
5 LEU A 118
ALA A  65
PHE A  69
MET A 161
TYR A 110
None
0.94A 3bszF-4zz7A:
undetectable
3bszF-4zz7A:
18.27
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5bwa ORNITHINE
DECARBOXYLASE


(Homo sapiens)
PF00278
(Orn_DAP_Arg_deC)
PF02784
(Orn_Arg_deC_N)
5 LEU A  49
ALA A 283
PHE A 284
ALA A  43
MET A 409
None
1.19A 3bszF-5bwaA:
undetectable
3bszF-5bwaA:
18.68
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hb4 NUP192,NUCLEOPORIN
NUP192


(Chaetomium
thermophilum)
PF11894
(Nup192)
5 LEU B 497
ALA B 529
ALA B 520
MET B 515
TYR B 475
None
1.17A 3bszF-5hb4B:
undetectable
3bszF-5hb4B:
7.71
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5hr4 MMEI

(Methylophilus
methylotrophus)
no annotation 5 LEU C 266
ALA C 269
PHE C 271
GLN C 420
PHE C 233
None
1.32A 3bszF-5hr4C:
undetectable
3bszF-5hr4C:
12.16
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5i1t STAGE II SPORULATION
PROTEIN D


(Clostridioides
difficile)
PF08486
(SpoIID)
5 LEU A  98
ALA A 110
ALA A 327
TYR A 194
GLN A 147
None
None
None
CTO  A 404 (-3.5A)
None
1.50A 3bszF-5i1tA:
undetectable
3bszF-5i1tA:
18.98
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5jmv PROBABLE
BIFUNCTIONAL TRNA
THREONYLCARBAMOYLADE
NOSINE BIOSYNTHESIS
PROTEIN
UNCHARACTERIZED
PROTEIN


(Methanocaldococcus
jannaschii;
Pyrococcus
furiosus)
PF00814
(Peptidase_M22)
PF09341
(Pcc1)
5 LEU A  95
ALA A  90
PHE A  73
ALA A  87
TYR D  29
None
1.22A 3bszF-5jmvA:
undetectable
3bszF-5jmvA:
18.36
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5l44 K-26 DIPEPTIDYL
CARBOXYPEPTIDASE


(Astrosporangium
hypotensionis)
PF01432
(Peptidase_M3)
5 LEU A 105
PHE A  13
ALA A  37
MET A  42
PHE A  83
None
1.44A 3bszF-5l44A:
undetectable
3bszF-5l44A:
13.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5nug CYTOPLASMIC DYNEIN 1
HEAVY CHAIN 1


(Homo sapiens)
PF03028
(Dynein_heavy)
PF07728
(AAA_5)
PF08393
(DHC_N2)
PF12774
(AAA_6)
PF12775
(AAA_7)
PF12777
(MT)
PF12780
(AAA_8)
PF12781
(AAA_9)
5 ALA A1862
PHE A1836
MET A1842
GLN A1881
GLN A4249
None
1.38A 3bszF-5nugA:
undetectable
3bszF-5nugA:
3.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6ehn CARBOHYDRATE
ESTERASE MZ0003


(unidentified
prokaryotic
organism)
no annotation 5 LEU A  21
ALA A 347
ALA A 320
MET A 353
GLN A  34
None
1.34A 3bszF-6ehnA:
undetectable
3bszF-6ehnA:
undetectable