SIMILAR PATTERNS OF AMINO ACIDS FOR 3BMC_B_FOLB270

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site

Query pattern: Residues from known binding site for annotated drug that match the hit pattern


(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism
Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1mxf PTERIDINE REDUCTASE
2


(Trypanosoma
cruzi)
PF13561
(adh_short_C2)
6 ARG A  22
SER A 103
PRO A 107
PHE A 179
PRO A 218
MET A 221
NDP  A1277 ( 3.9A)
MTX  A1278 ( 2.7A)
None
None
MTX  A1278 ( 4.1A)
MTX  A1278 (-4.6A)
0.77A 3bmcB-1mxfA:
14.4
3bmcB-1mxfA:
56.85
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1mxf PTERIDINE REDUCTASE
2


(Trypanosoma
cruzi)
PF13561
(adh_short_C2)
6 ARG A  22
SER A 103
PRO A 107
PHE A 179
TYR A 182
PRO A 218
NDP  A1277 ( 3.9A)
MTX  A1278 ( 2.7A)
None
None
MTX  A1278 ( 4.7A)
MTX  A1278 ( 4.1A)
0.58A 3bmcB-1mxfA:
14.4
3bmcB-1mxfA:
56.85
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
1p33 PTERIDINE REDUCTASE
1


(Leishmania
tarentolae)
PF13561
(adh_short_C2)
7 ARG A  17
SER A 111
PHE A 113
PRO A 115
TYR A 194
PRO A 230
MET A 233
NDP  A 300 ( 3.7A)
MTX  A 351 ( 2.8A)
MTX  A 351 (-3.5A)
MTX  A 351 (-4.2A)
MTX  A 351 ( 4.4A)
MTX  A 351 (-3.3A)
MTX  A 351 ( 4.8A)
0.68A 3bmcB-1p33A:
41.5
3bmcB-1p33A:
48.53
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
2qhx PTERIDINE REDUCTASE
1


(Leishmania
major)
PF00106
(adh_short)
PF13561
(adh_short_C2)
5 ARG A  17
SER A 111
PHE A 113
PRO A 115
TYR A 194
NAP  A1300 ( 3.7A)
FE1  A1301 ( 2.8A)
FE1  A1301 (-3.4A)
None
FE1  A1301 ( 4.5A)
0.33A 3bmcB-2qhxA:
40.5
3bmcB-2qhxA:
49.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2zkm 1-PHOSPHATIDYLINOSIT
OL-4,5-BISPHOSPHATE
PHOSPHODIESTERASE
BETA-2


(Homo sapiens)
PF00168
(C2)
PF00387
(PI-PLC-Y)
PF00388
(PI-PLC-X)
PF09279
(EF-hand_like)
5 SER X 560
CYH X 621
PHE X 588
TYR X 591
GLU X 574
None
1.49A 3bmcB-2zkmX:
0.2
3bmcB-2zkmX:
15.94
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4oj5 TAILSPIKE PROTEIN

(Escherichia
virus CBA120)
no annotation 5 SER A 500
PHE A 493
TYR A 520
PRO A 480
GLU A 483
None
1.10A 3bmcB-4oj5A:
0.1
3bmcB-4oj5A:
16.28
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pfw ABC TRANSPORTER
SUBSTRATE-BINDING
PROTEIN


(Thermotoga
maritima)
PF00496
(SBP_bac_5)
5 PHE A 324
PRO A 442
TYR A 445
PRO A 335
GLU A 493
None
1.39A 3bmcB-4pfwA:
0.0
3bmcB-4pfwA:
19.75
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
4wcd PTERIDINE REDUCTASE

(Trypanosoma
brucei)
PF13561
(adh_short_C2)
10 ARG A  14
SER A  95
PHE A  97
PRO A  99
CYH A 168
PHE A 171
TYR A 174
PRO A 210
MET A 213
TRP A 221
NAP  A 301 (-3.7A)
NAP  A 301 ( 3.1A)
3KH  A 302 (-3.5A)
None
3KH  A 302 ( 4.1A)
None
3KH  A 302 ( 4.7A)
3KH  A 302 ( 4.0A)
None
3KH  A 302 (-3.8A)
0.29A 3bmcB-4wcdA:
45.5
3bmcB-4wcdA:
93.06
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
5tgd FOLM ALTERNATIVE
DIHYDROFOLATE
REDUCTASE


(Brucella suis)
PF00106
(adh_short)
5 ARG A  31
SER A 105
PHE A 107
PHE A 165
TYR A 168
NAP  A 301 (-3.9A)
NAP  A 301 (-3.0A)
None
None
None
0.53A 3bmcB-5tgdA:
32.3
3bmcB-5tgdA:
31.65