SIMILAR PATTERNS OF AMINO ACIDS FOR 3APW_A_DP0A190_2

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1eg7 FORMYLTETRAHYDROFOLA
TE SYNTHETASE

(Moorella
thermoacetica) 		PF01268
(FTHFS) 		4 VAL A1201
ARG A1097
HIS A1280
PHE A1275
 None
SO4  A   1 (-2.9A)
None
None
 1.35A 3apwA-1eg7A:
0.0		 3apwA-1eg7A:
13.11
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1ovw ENDOGLUCANASE I

(Fusarium
oxysporum) 		PF00840
(Glyco_hydro_7) 		4 VAL A 260
ARG A 285
HIS A 286
PHE A 266
 None
 1.17A 3apwA-1ovwA:
0.1		 3apwA-1ovwA:
17.21
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1qg1 PROTEIN (GROWTH
FACTOR RECEPTOR
BINDING PROTEIN)

(Homo sapiens) 		PF00017
(SH2) 		4 VAL E  44
ARG E  94
HIS E  24
PHE E  46
 None
 1.19A 3apwA-1qg1E:
1.2		 3apwA-1qg1E:
18.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1wgr GROWTH FACTOR
RECEPTOR-BOUND
PROTEIN 7

(Homo sapiens) 		PF00788
(RA) 		4 VAL A  40
ARG A  33
HIS A  34
PHE A  89
 None
 1.15A 3apwA-1wgrA:
undetectable		 3apwA-1wgrA:
17.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2p57 GTPASE-ACTIVATING
PROTEIN ZNF289

(Homo sapiens) 		PF01412
(ArfGap) 		4 VAL A  58
ARG A  54
HIS A  53
PHE A  62
 None
 1.49A 3apwA-2p57A:
undetectable		 3apwA-2p57A:
23.59
Available target for annotated drug, i.e. matched protein structure has more than 30% sequence identity to known drug target.
3apu ALPHA-1-ACID
GLYCOPROTEIN 2

(Homo sapiens) 		PF00061
(Lipocalin) 		4 VAL A  88
ARG A  90
HIS A  97
PHE A 112
 None
PG4  A 190 (-4.3A)
None
PG4  A 190 ( 3.9A)
 0.28A 3apwA-3apuA:
33.4		 3apwA-3apuA:
100.00
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4n78 CYTOPLASMIC
FMR1-INTERACTING
PROTEIN 1

(Homo sapiens) 		PF05994
(FragX_IP)
PF07159
(DUF1394) 		4 VAL A 480
ARG A 477
HIS A 474
PHE A 391
 None
 1.30A 3apwA-4n78A:
0.0		 3apwA-4n78A:
9.06
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4ykn PHOSPHATIDYLINOSITOL
3-KINASE REGULATORY
SUBUNIT
ALPHA,PHOSPHATIDYLIN
OSITOL
4,5-BISPHOSPHATE
3-KINASE CATALYTIC
SUBUNIT ALPHA
ISOFORM FUSION
PROTEIN

(Homo sapiens) 		PF00017
(SH2)
PF00454
(PI3_PI4_kinase)
PF00613
(PI3Ka)
PF00792
(PI3K_C2)
PF00794
(PI3K_rbd)
PF02192
(PI3K_p85B)
PF16454
(PI3K_P85_iSH2) 		4 VAL A1706
ARG A1704
HIS A1701
PHE A1119
 None
 1.42A 3apwA-4yknA:
0.0		 3apwA-4yknA:
8.46
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a4j FORMATE--TETRAHYDROF
OLATE LIGASE

(Tepidanaerobacter
acetatoxydans) 		PF01268
(FTHFS) 		4 VAL A 200
ARG A  96
HIS A 279
PHE A 274
 None
EDO  A1560 (-3.0A)
None
None
 1.30A 3apwA-5a4jA:
0.0		 3apwA-5a4jA:
15.03
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5a5g FORMATE--TETRAHYDROF
OLATE LIGASE

(Tepidanaerobacter
acetatoxydans) 		PF01268
(FTHFS) 		4 VAL A 199
ARG A  95
HIS A 278
PHE A 273
 None
 1.43A 3apwA-5a5gA:
0.0		 3apwA-5a5gA:
15.59
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kpg PAVINE
N-METHYLTRANSFERASE

(Thalictrum
flavum) 		PF02353
(CMAS) 		4 VAL A 261
ARG A  39
HIS A 234
PHE A  58
 None
 1.50A 3apwA-5kpgA:
undetectable		 3apwA-5kpgA:
20.05
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yow GLYCOPROTEIN
POLYPROTEIN

(Heartland virus) 		no annotation 4 VAL A 302
ARG A 303
HIS A 400
PHE A 304
 None
 1.49A 3apwA-5yowA:
undetectable		 3apwA-5yowA:
16.48