SIMILAR PATTERNS OF AMINO ACIDS FOR 3ABM_O_CHDO229

List of similar pattern of amino acids derived from ASSAM search

Hit pattern: 3D amino acid arrangements similar to known drug binding site
Query pattern: Residues from known binding site for annotated drug that match the hit pattern

(Click link on the last column to view superposed patterns of amino acids in NGL viewer)
(Note that only 3-12 residue patterns can be used for ASSAM searches)
Filter list by:
Hit Macromolecule/
Organism		 Pfam Res. Interface HETATM RMSD Dali Z-score Seq. Identity (%) View Dock
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
1k5s PENICILLIN G ACYLASE
BETA SUBUNIT

(Escherichia
coli) 		PF01804
(Penicil_amidase) 		5 PHE B 531
GLY B 532
MET B 485
GLU B 482
THR B 481
 None
 1.17A 3abmG-1k5sB:
0.0
3abmN-1k5sB:
0.7
3abmO-1k5sB:
0.0		 3abmG-1k5sB:
12.50
3abmN-1k5sB:
20.53
3abmO-1k5sB:
17.45
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2cdq ASPARTOKINASE

(Arabidopsis
thaliana) 		PF00696
(AA_kinase) 		5 ARG A 153
GLY A 147
GLY A 214
THR A 226
THR A 227
 None
 1.45A 3abmG-2cdqA:
0.0
3abmN-2cdqA:
1.0
3abmO-2cdqA:
0.0		 3abmG-2cdqA:
9.92
3abmN-2cdqA:
22.15
3abmO-2cdqA:
20.65
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2qua EXTRACELLULAR LIPASE

(Serratia
marcescens) 		no annotation 5 GLY A 174
GLY A 181
GLU A 112
THR A 117
THR A 113
 None
 1.35A 3abmG-2quaA:
0.0
3abmN-2quaA:
0.0
3abmO-2quaA:
0.5		 3abmG-2quaA:
9.09
3abmN-2quaA:
21.91
3abmO-2quaA:
15.42
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
2xhy 6-PHOSPHO-BETA-GLUCO
SIDASE BGLA

(Escherichia
coli) 		PF00232
(Glyco_hydro_1) 		5 GLY A 350
GLY A 381
TRP A 351
THR A 435
THR A 434
 None
None
None
None
SO4  A1481 (-4.0A)
 1.36A 3abmG-2xhyA:
0.0
3abmN-2xhyA:
0.0
3abmO-2xhyA:
0.0		 3abmG-2xhyA:
10.37
3abmN-2xhyA:
20.62
3abmO-2xhyA:
18.60
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3bt7 TRNA
(URACIL-5-)-METHYLTR
ANSFERASE

(Escherichia
coli) 		PF05958
(tRNA_U5-meth_tr) 		5 ARG A 230
PHE A 224
GLY A 222
MET A 179
GLU A 170
 None
 1.40A 3abmG-3bt7A:
0.0
3abmN-3bt7A:
0.0
3abmO-3bt7A:
0.0		 3abmG-3bt7A:
13.92
3abmN-3bt7A:
20.94
3abmO-3bt7A:
20.40
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3ce6 ADENOSYLHOMOCYSTEINA
SE

(Mycobacterium
tuberculosis) 		PF00670
(AdoHcyase_NAD)
PF05221
(AdoHcyase) 		5 ARG A 406
PHE A  96
GLY A 411
GLY A 359
THR A 269
 None
 1.27A 3abmG-3ce6A:
0.0
3abmN-3ce6A:
0.0
3abmO-3ce6A:
0.0		 3abmG-3ce6A:
12.00
3abmN-3ce6A:
22.59
3abmO-3ce6A:
18.09
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3cvr INVASION PLASMID
ANTIGEN

(Shigella
flexneri) 		PF12468
(TTSSLRR)
PF14496
(NEL) 		5 ARG A 375
GLY A 484
MET A 402
GLY A 399
THR A 392
 None
 1.43A 3abmG-3cvrA:
0.0
3abmN-3cvrA:
0.0
3abmO-3cvrA:
0.0		 3abmG-3cvrA:
9.07
3abmN-3cvrA:
22.78
3abmO-3cvrA:
18.50
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3fgb UNCHARACTERIZED
PROTEIN Q89ZH8_BACTN

(Bacteroides
thetaiotaomicron) 		PF10282
(Lactonase) 		5 ARG A 112
PHE A 104
GLY A  83
GLY A 153
THR A 129
 None
 1.32A 3abmG-3fgbA:
0.0
3abmN-3fgbA:
undetectable
3abmO-3fgbA:
0.0		 3abmG-3fgbA:
13.33
3abmN-3fgbA:
20.44
3abmO-3fgbA:
21.47
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3s9b VIPERA RUSSELLI
PROTEINASE RVV-V
GAMMA

(Daboia
siamensis) 		PF00089
(Trypsin) 		5 ARG A 137
ARG A 135
PHE A 161
GLY A 184
GLY A  18
 None
 1.13A 3abmG-3s9bA:
0.0
3abmN-3s9bA:
undetectable
3abmO-3s9bA:
0.0		 3abmG-3s9bA:
15.53
3abmN-3s9bA:
19.00
3abmO-3s9bA:
21.01
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
3wy7 8-AMINO-7-OXONONANOA
TE SYNTHASE

(Mycolicibacterium
smegmatis) 		PF00155
(Aminotran_1_2) 		5 GLY A  94
GLY A 214
GLU A 201
THR A 230
THR A 231
 None
 1.34A 3abmG-3wy7A:
undetectable
3abmN-3wy7A:
0.0
3abmO-3wy7A:
undetectable		 3abmG-3wy7A:
12.93
3abmN-3wy7A:
21.19
3abmO-3wy7A:
19.49
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cgy DNA TOPOISOMERASE
3-ALPHA

(Homo sapiens) 		PF01131
(Topoisom_bac)
PF01751
(Toprim) 		5 PHE A 559
GLY A 552
MET A 566
GLY A 565
THR A 544
 None
 1.39A 3abmG-4cgyA:
undetectable
3abmN-4cgyA:
0.0
3abmO-4cgyA:
undetectable		 3abmG-4cgyA:
9.36
3abmN-4cgyA:
20.21
3abmO-4cgyA:
12.96
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cu8 GLYCOSIDE HYDROLASE
2

(Streptococcus
pneumoniae) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF16355
(DUF4982) 		5 PHE A 444
GLY A 643
GLY A 597
GLU A 505
THR A 482
 None
 1.30A 3abmG-4cu8A:
undetectable
3abmN-4cu8A:
undetectable
3abmO-4cu8A:
undetectable		 3abmG-4cu8A:
7.93
3abmN-4cu8A:
20.58
3abmO-4cu8A:
14.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4cu8 GLYCOSIDE HYDROLASE
2

(Streptococcus
pneumoniae) 		PF00703
(Glyco_hydro_2)
PF02836
(Glyco_hydro_2_C)
PF02837
(Glyco_hydro_2_N)
PF16355
(DUF4982) 		5 PHE A 444
GLY A 643
GLY A 597
THR A 482
THR A 483
 None
 1.40A 3abmG-4cu8A:
undetectable
3abmN-4cu8A:
undetectable
3abmO-4cu8A:
undetectable		 3abmG-4cu8A:
7.93
3abmN-4cu8A:
20.58
3abmO-4cu8A:
14.29
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4h19 MANDELATE RACEMASE

(Agrobacterium
fabrum) 		PF02746
(MR_MLE_N)
PF13378
(MR_MLE_C) 		5 ARG A  99
ARG A  90
GLY A 101
THR A 280
THR A  49
 None
GOL  A 409 (-4.0A)
CL  A 403 ( 4.0A)
None
None
 1.50A 3abmG-4h19A:
undetectable
3abmN-4h19A:
undetectable
3abmO-4h19A:
undetectable		 3abmG-4h19A:
13.11
3abmN-4h19A:
21.11
3abmO-4h19A:
21.39
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4pel PENICILLIN G ACYLASE
SUBUNIT BETA

(Kluyvera
cryocrescens) 		PF01804
(Penicil_amidase) 		5 PHE B 531
GLY B 532
MET B 485
GLU B 482
THR B 481
 None
 1.24A 3abmG-4pelB:
undetectable
3abmN-4pelB:
0.7
3abmO-4pelB:
undetectable		 3abmG-4pelB:
9.81
3abmN-4pelB:
21.29
3abmO-4pelB:
17.12
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
4qdg PUTATIVE ADHESIN

(Bacteroides
thetaiotaomicron) 		PF08842
(Mfa2) 		5 ARG A 253
PHE A 119
GLY A 153
MET A 175
THR A  67
 None
 1.40A 3abmG-4qdgA:
undetectable
3abmN-4qdgA:
undetectable
3abmO-4qdgA:
undetectable		 3abmG-4qdgA:
13.97
3abmN-4qdgA:
20.49
3abmO-4qdgA:
23.20
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5k1b WD REPEAT-CONTAINING
PROTEIN 48

(Homo sapiens) 		PF00400
(WD40)
PF11816
(DUF3337) 		5 ARG B  30
GLY B 359
GLY B  49
THR B 317
THR B 316
 None
 1.49A 3abmG-5k1bB:
undetectable
3abmN-5k1bB:
undetectable
3abmO-5k1bB:
undetectable		 3abmG-5k1bB:
9.01
3abmN-5k1bB:
20.86
3abmO-5k1bB:
15.62
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5kqi CATALASE-PEROXIDASE

(Burkholderia
pseudomallei) 		PF00141
(peroxidase) 		5 PHE A 182
GLY A 277
GLY A 104
THR A 333
THR A 331
 None
None
HEM  A 801 (-3.4A)
None
None
 1.47A 3abmG-5kqiA:
undetectable
3abmN-5kqiA:
undetectable
3abmO-5kqiA:
undetectable		 3abmG-5kqiA:
8.52
3abmN-5kqiA:
20.60
3abmO-5kqiA:
16.18
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
5yb7 L-AMINO ACID
OXIDASE/MONOOXYGENAS
E

(Pseudomonas sp.
AIU 813) 		no annotation 5 PHE A  22
GLY A 519
GLU A 518
THR A  16
THR A 252
 None
 1.48A 3abmG-5yb7A:
undetectable
3abmN-5yb7A:
0.6
3abmO-5yb7A:
undetectable		 3abmG-5yb7A:
undetectable
3abmN-5yb7A:
undetectable
3abmO-5yb7A:
undetectable
Potential target for repurposing, i.e. matched protein structure has less than 30% sequence identity to known drug target, and may potentially interact with the same drug molecule based on local structural similarity of binding site.
6req PROTEIN
(METHYLMALONYL-COA
MUTASE)

(Propionibacterium
freudenreichii) 		PF01642
(MM_CoA_mutase) 		5 PHE B  93
GLY B  96
GLY B 400
GLU B 406
THR B 409
 None
 1.31A 3abmG-6reqB:
undetectable
3abmN-6reqB:
1.7
3abmO-6reqB:
undetectable		 3abmG-6reqB:
8.67
3abmN-6reqB:
22.06
3abmO-6reqB:
16.19